RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 MTBPQ96DY7 904 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TMEM39BQ9GZU3 492 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 EPB41L4AQ9HCS5 686 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 TLR9Q9NR96 1032 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TNPO3Q9Y5L0 923 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ABCA5Q8WWZ7 1642 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 HEATR9A2RTY3 570 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 VWA3AA6NCI4 1184 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 RBAK-RBAKDNI3L0D1 243 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 M0R3G1 203 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NPC1O15118 1278 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 P4HA2O15460 535 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 AKAP8O43823 692 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ALDOAP04075 364 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 NFKB1P19838 968 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 RHOAP61586 193 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MRPS15P82914 257 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 MRPS6P82932 125 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 LBRQ14739 615 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 UGT3A1Q6NUS8 523 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 VSTM1Q6UX27 236 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 METTL7BQ6UX53 244 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CYFIP1Q7L576 1253 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MAATS1Q7Z4T9 603 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 DNAJB7Q7Z6W7 309 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 TAF8Q7Z7C8 310 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SNX32Q86XE0 403 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NOSTRINQ8IVI9 506 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MAB21L3Q8N8X9 362 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 FBXO18Q8NFZ0 1043 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PANK1Q8TE04 598 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 RERGQ96A58 199 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 NXPE2Q96DL1 559 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CAMKK2Q96RR4 588 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NUF2Q9BZD4 464 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 RRN3Q9NYV6 651 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.28□□□□□ -1.72
USH2A-202ENST00000366942 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.28□□□□□ -1.72
USH2A-202ENST00000366942 ERVK-7P63135 1459 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SHISA7A6NL88 538 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 C5orf58C9J3I9 102 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NBNO60934 754 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GSTT2P0CG29 244 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GSTT2BP0CG30 244 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ATP6V1C1P21283 382 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MXI1P50539 228 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CYP24A1Q07973 514 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 FOXM1Q08050 763 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TRIM28Q13263 835 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 NR5A1Q13285 461 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GRB10Q13322 594 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 EPHA7Q15375 998 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 GDF6Q6KF10 455 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 PGM2L1Q6PCE3 622 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SLC24A5Q71RS6 500 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CYP4X1Q8N118 509 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 POMGNT2Q8NAT1 580 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 OR10Q1Q8NGQ4 319 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PHF21AQ96BD5 680 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SPATA17Q96L03 361 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CCDC138Q96M89 665 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PANK2Q9BZ23 570 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 CLPBQ9H078 707 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 UNC93B1Q9H1C4 597 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 POLR3FQ9H1D9 316 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 PRDM16Q9HAZ2 1276 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 VCX3AQ9NNX9 186 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 POLR1DQ9Y2S0 133 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PSAT1Q9Y617 370 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MED23Q9ULK4 1368 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MYOM2P54296 1465 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 H0YGN5 161 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MKRN2OSH3BPM6 223 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 VPS26AO75436 327 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 OR6A2O95222 327 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PGK1P00558 417 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 YWHAQP27348 245 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SEMA3AQ14563 771 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 TRIP4Q15650 581 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 PLEKHG6Q3KR16 790 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 EFHC1Q5JVL4 640 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 HFE2Q6ZVN8 426 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 MCUQ8NE86 351 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 DBNDD2Q9BQY9 259 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 PRKD2Q9BZL6 878 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SIK2Q9H0K1 926 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 LRMDAQ9H2I8 198 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 LDAHQ9H6V9 325 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 ZWILCHQ9H900 591 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NCOA5Q9HCD5 579 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 LATS2Q9NRM7 1088 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 KCNH7Q9NS40 1196 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 NKIRAS1Q9NYS0 192 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 KLHL8Q9P2G9 620 aaPredicted RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 SUFUQ9UMX1 484 aa4.28□□□□□ -1.72
USH2A-202ENST00000366942 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.28□□□□□ -1.72
USH2A-202ENST00000366942 CD163L1Q9NR16 1453 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TSPOAP1O95153 1857 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CTAGE9A4FU28 777 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 AXIN1O15169 862 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms