RNA–Protein interactions for RNA: ENST00000360565.7

SCAF1-201, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SCAF1, Length 4,306 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-201ENST00000360565 SDCCAG3Q96C92 435 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 HES6Q96HZ4 224 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 AVENQ9NQS1 362 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 VAV3Q9UKW4 847 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TRAPPC3O43617 180 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 ATP9AO75110 1047 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 S100BP04271 92 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 VCPP55072 806 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 PRAMEP78395 509 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 LAMTOR4Q0VGL1 99 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 HIC1Q14526 733 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 R3HDM1Q15032 1099 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 CCDC60Q8IWA6 550 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 IQCKQ8N0W5 287 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TTC8Q8TAM2 541 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 PAFAH2Q99487 392 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 SLC24A3Q9HC58 644 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 A1CFQ9NQ94 594 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 HAO1Q9UJM8 370 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 SYNPO2Q9UMS6 1093 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 MTO1Q9Y2Z2 717 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TYW5A2RUC4 315 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 SHBGP04278 402 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 STAG3L1P0CL83 205 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 VDRP11473 427 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 NQO1P15559 274 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 ELF1P32519 619 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 GNL1P36915 607 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 CACNB2Q08289 660 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 LAMC2Q13753 1193 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 BTBD8Q5XKL5 378 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 AP1ARQ63HQ0 302 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 CAPRIN2Q6IMN6 1127 aaKnown RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 FAM71AQ8IYT1 594 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 ANKRD13AQ8IZ07 590 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 ADA2Q9NZK5 511 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 USP18Q9UMW8 372 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 PECAM1P16284 738 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 CHI3L2Q15782 390 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TTC39BQ5VTQ0 682 aaPredicted RBP17.05■□□□□ 0.32
SCAF1-201ENST00000360565 METTL7BQ6UX53 244 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 VSIG10LQ86VR7 867 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 TMEM161BQ8NDZ6 487 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 SHC3Q92529 594 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 FAM84AQ96KN4 292 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 DNPEPQ9ULA0 475 aa17.05■□□□□ 0.32
SCAF1-201ENST00000360565 CTSHP09668 335 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 ZCWPW2Q504Y3 356 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 FKBP1CQ5VVH2 108 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 RXFP2Q8WXD0 754 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 VCPIP1Q96JH7 1222 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 KLK14Q9P0G3 267 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 HEY2Q9UBP5 337 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 BAG5Q9UL15 447 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 C3orf70A6NLC5 250 aaPredicted RBP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 NEMP1O14524 444 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 MTHFD1LQ6UB35 978 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 CD302Q8IX05 232 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 CNPY3Q9BT09 278 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 NINJ2Q9NZG7 142 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 FZD1Q9UP38 647 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 MED1Q15648 1581 aaPredicted RBP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 RBAK-RBAKDNI3L0D1 243 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 EEF2KO00418 725 aaKnown RBP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 CD4P01730 458 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 CDH8P55286 799 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 ITGB3BPQ13352 177 aaPredicted RBP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 PDCD6IPQ8WUM4 868 aaKnown RBP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 KDM4CQ9H3R0 1056 aa17.04■□□□□ 0.32
SCAF1-201ENST00000360565 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.04■□□□□ 0.32
SCAF1-201ENST00000360565 A0A087WZ62 844 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 LOC100653049A0A140TA62 436 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 ADCY3O60266 1144 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 KRT34O76011 436 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 VTNP04004 478 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 SNAPC2Q13487 334 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 PDK1Q15118 436 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 LY6KQ17RY6 165 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 LRRC36Q1X8D7 754 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 PACS2Q86VP3 889 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 SLC7A14Q8TBB6 771 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 MTBPQ96DY7 904 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 STAMBPL1Q96FJ0 436 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 FDXACB1Q9BRP7 624 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-201ENST00000360565 FRMD8Q9BZ67 464 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-201ENST00000360565 GRID1Q9ULK0 1009 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 FAM172AQ8WUF8 416 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 ZNF669Q96BR6 464 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-201ENST00000360565 PCDH9Q9HC56 1237 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 CASZ1Q86V15 1759 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 CDC42EP1Q00587 391 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 FMO1Q01740 532 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 KIZQ2M2Z5 673 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 TRAPPC12Q8WVT3 735 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.03■□□□□ 0.324e-7■■□□□ 11.8
SCAF1-201ENST00000360565 SUDS3Q9H7L9 328 aaPredicted RBP17.03■□□□□ 0.32
SCAF1-201ENST00000360565 UBIAD1Q9Y5Z9 338 aa17.03■□□□□ 0.32
SCAF1-201ENST00000360565 F8VP50 259 aa17.02■□□□□ 0.32
SCAF1-201ENST00000360565 DNALI1O14645 258 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms