RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FUKQ8N0W3 1084 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 RC3H2Q9HBD1 1191 aaKnown RBP19.69■□□□□ 0.74
CLN3-206ENST00000360019 HESX1Q9UBX0 185 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 ADAM28Q9UKQ2 775 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 CDH9Q9ULB4 789 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 ARHGEF37A1IGU5 675 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 MYBPHLA2RUH7 354 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 NCK2O43639 380 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 BAIAP3O94812 1187 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 PCSK1P29120 753 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 PDE4CQ08493 712 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 MAMLD1Q13495 774 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 PAPD7Q5XG87 772 aaKnown RBP19.68■□□□□ 0.74
CLN3-206ENST00000360019 OVOS1Q6IE37 1185 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 FAM117BQ6P1L5 589 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 PAQR9Q6ZVX9 377 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 DAAM2Q86T65 1068 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 C7orf61Q8IZ16 206 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 ANKRD52Q8NB46 1076 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 SLC35F5Q8WV83 523 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 ZNF689Q96CS4 500 aaPredicted RBP19.68■□□□□ 0.74
CLN3-206ENST00000360019 HNRNPABQ99729 332 aaKnown RBP19.68■□□□□ 0.74
CLN3-206ENST00000360019 ACBD6Q9BR61 282 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 TLR10Q9BXR5 811 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 TRIM7Q9C029 511 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 CWH43Q9H720 699 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 FAN1Q9Y2M0 1017 aa19.68■□□□□ 0.74
CLN3-206ENST00000360019 NT5C1B-RDH14C9J2C7 533 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 ERBB2P04626 1255 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 CDR1P51861 262 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 BCAR1P56945 870 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 PTPROQ16827 1216 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 MEI1Q5TIA1 1274 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 PMF1Q6P1K2 205 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 OR10T2Q8NGX3 314 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 BTBD6Q96KE9 485 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 CALR3Q96L12 384 aaKnown RBP19.67■□□□□ 0.74
CLN3-206ENST00000360019 COLEC11Q9BWP8 271 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 GPR62Q9BZJ7 368 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 L2HGDHQ9H9P8 463 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 ABCB6Q9NP58 842 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 PACSIN2Q9UNF0 486 aaPredicted RBP19.67■□□□□ 0.74
CLN3-206ENST00000360019 CLDN5O00501 218 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 TRAPPC3O43617 180 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 GJB6O95452 261 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 GABRB2P47870 512 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 BCAT1P54687 386 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 YWHAHQ04917 246 aaPredicted RBP19.67■□□□□ 0.74
CLN3-206ENST00000360019 BCL7CQ8WUZ0 217 aaPredicted RBP19.67■□□□□ 0.74
CLN3-206ENST00000360019 C18orf8Q96DM3 657 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 PCED1BQ96HM7 432 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 B3GNT5Q9BYG0 378 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 PARVAQ9NVD7 372 aa19.67■□□□□ 0.74
CLN3-206ENST00000360019 SETSIPP0DME0 302 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 RGS7P49802 495 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 EPHB4P54760 987 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 FPGSQ05932 587 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 BST2Q10589 180 aaKnown RBP19.66■□□□□ 0.74
CLN3-206ENST00000360019 PPIGQ13427 754 aaKnown RBP eCLIP19.66■□□□□ 0.746e-7■■□□□ 11.8
CLN3-206ENST00000360019 INTS6LQ5JSJ4 861 aaKnown RBP19.66■□□□□ 0.74
CLN3-206ENST00000360019 C11orf63Q6NUN7 778 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 XYLT1Q86Y38 959 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 SYCE1Q8N0S2 351 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 C3orf20Q8ND61 904 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 MYCBPAPQ8TBZ2 947 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 TMEM209Q96SK2 561 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 PKMYT1Q99640 499 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 SYNCQ9H7C4 482 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 MRPL47Q9HD33 250 aaKnown RBP19.66■□□□□ 0.74
CLN3-206ENST00000360019 ST7Q9NRC1 585 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 ANAPC7Q9UJX3 599 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 STRIP2Q9ULQ0 834 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 HYOU1Q9Y4L1 999 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 SCINQ9Y6U3 715 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 VWA8A3KMH1 1905 aa19.66■□□□□ 0.74
CLN3-206ENST00000360019 E5RJQ4 531 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 SYN3O14994 580 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 GSCP56915 257 aaPredicted RBP19.65■□□□□ 0.74
CLN3-206ENST00000360019 PLCB3Q01970 1234 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 PPP1R15BQ5SWA1 713 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 FAM171BQ6P995 826 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 ZNF365Q70YC5 407 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 NT5DC3Q86UY8 548 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 THEM5Q8N1Q8 247 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 SLC4A5Q9BY07 1137 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 MRFAP1Q9Y605 127 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 PTPRSQ13332 1948 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 PIK3R2O00459 728 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 RIOK3O14730 519 aaKnown RBP19.65■□□□□ 0.74
CLN3-206ENST00000360019 GABBR2O75899 941 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 OAZ2O95190 189 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 RPL7AP62424 266 aaKnown RBP19.65■□□□□ 0.74
CLN3-206ENST00000360019 MESDQ14696 234 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 FAM171A1Q5VUB5 890 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 DNAJC24Q6P3W2 148 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 FUT10Q6P4F1 479 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 CPNE8Q86YQ8 564 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 MSANTD4Q8NCY6 345 aa19.65■□□□□ 0.74
CLN3-206ENST00000360019 IPO4Q8TEX9 1081 aaKnown RBP19.65■□□□□ 0.74
CLN3-206ENST00000360019 STK32AQ8WU08 396 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms