RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PSMC3P17980 439 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 MLH1P40692 756 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 KPNA1P52294 538 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 SCARF1Q14162 830 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 RNF180Q86T96 592 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TMEM143Q96AN5 459 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 DNAJC1Q96KC8 554 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 OSBPL3Q9H4L5 887 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TBC1D23Q9NUY8 699 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 IQSEC2Q5JU85 1478 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 PCSK1P29120 753 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CYP2C19P33261 490 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SLC11A2P49281 568 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 PLIN5Q00G26 463 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 TAF13Q15543 124 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CYP51A1Q16850 503 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ALKBH2Q6NS38 261 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 RD3Q7Z3Z2 195 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ATP6V0D2Q8N8Y2 350 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 DDI1Q8WTU0 396 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CMTM5Q96DZ9 223 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 PHACTR1Q9C0D0 580 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 RNPEPQ9H4A4 650 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 RAB6BQ9NRW1 208 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 IARS2Q9NSE4 1012 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 FBXO10Q9UK96 956 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 BIRC5O15392 142 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 MTRF1O75570 445 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 GRAP2O75791 330 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CELF2O95319 508 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 GGCXP38435 758 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 PSMC6P62333 389 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ADGRF4Q8IZF3 695 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 LRRC71Q8N4P6 559 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 DTX3LQ8TDB6 740 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 TMEM169Q96HH4 297 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 THUMPD3Q9BV44 507 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 COLEC11Q9BWP8 271 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 MOV10L1Q9BXT6 1211 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NLNQ9BYT8 704 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SPRTNQ9H040 489 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 WDR41Q9HAD4 459 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 FAM49BQ9NUQ9 324 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 DCDC2Q9UHG0 476 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NEDD4P46934 1319 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 F5H6K3 240 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 PCDH8O95206 1070 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 KLRC3Q07444 240 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NFIL3Q16649 462 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NFRKBQ6P4R8 1299 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CPA5Q8WXQ8 436 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 FRMD6Q96NE9 622 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CCDC134Q9H6E4 229 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NCF1BA6NI72 391 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NCF1CA8MVU1 366 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 H7C4K7 107 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 PSMD14O00487 310 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CPSF4O95639 269 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CLTBP09497 229 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NCF1P14598 390 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 POU1F1P28069 291 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SOX6P35712 828 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 HSPA9P38646 679 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SERPINB9P50453 376 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 GOLGA7BQ2TAP0 167 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF284Q2VY69 593 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NBPF9Q3BBW0 867 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 WLSQ5T9L3 541 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 CAPRIN2Q6IMN6 1127 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SLC44A5Q8NCS7 719 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SPATA18Q8TC71 538 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 GFM2Q969S9 779 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ARHGEF26Q96DR7 871 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 EPC1Q9H2F5 836 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NPHS2Q9NP85 383 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 GRID2IPA4D2P6 1211 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 XPO1O14980 1071 aaKnown RBP10.58□□□□□ -0.72
CLIP1-202ENST00000358808 USP1O94782 785 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 NCAM1P13591 858 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF24P17028 368 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SCP2P22307 547 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 SLC1A1P43005 524 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 COX10Q12887 443 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 AHI1Q8N157 1196 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 MCEEQ96PE7 176 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 AGPAT1Q99943 283 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 RMND5AQ9H871 391 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 LNPEPQ9UIQ6 1025 aa10.58□□□□□ -0.72
CLIP1-202ENST00000358808 C2orf81A6NN90 581 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 FAM25AB3EWG3 89 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 FAM25CB3EWG5 89 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 FAM25GB3EWG6 89 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 NMT2O60551 498 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 FCGRTP55899 365 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 RESTQ13127 1097 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 PDIA6Q15084 440 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 DCAF6Q58WW2 860 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 CENPLQ8N0S6 344 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-202ENST00000358808 GRAMD1AQ96CP6 724 aa10.57□□□□□ -0.72
CLIP1-202ENST00000358808 YME1L1Q96TA2 773 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms