RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 POU5F1BQ06416 359 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 FASTKD3Q14CZ7 662 aaKnown RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 RASA2Q15283 850 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 TMED2Q15363 201 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 TRABD2AQ86V40 505 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 SULF1Q8IWU6 871 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 NLGN2Q8NFZ4 835 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 VRTNQ9H8Y1 702 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 KCNH4Q9UQ05 1017 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 SPDYE5A6NIY4 337 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 GPR25O00155 361 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 ATP2C2O75185 946 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 ITGBL1O95965 494 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-201ENST00000351487 ZNF268Q14587 947 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-201ENST00000351487 CENPUQ71F23 418 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 PCGF5Q86SE9 256 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 KIAA0319LQ8IZA0 1049 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 SLC4A11Q8NBS3 891 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 CXorf38Q8TB03 319 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 ACTL9Q8TC94 416 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 COPS5Q92905 334 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 DCPSQ96C86 337 aaKnown RBP23.27■■□□□ 1.32
UPF3A-201ENST00000351487 MLXIPLQ9NP71 852 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 ADARB2Q9NS39 739 aaKnown RBP23.27■■□□□ 1.32
UPF3A-201ENST00000351487 HAUS2Q9NVX0 235 aa23.27■■□□□ 1.32
UPF3A-201ENST00000351487 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.27■■□□□ 1.32
UPF3A-201ENST00000351487 CILPO75339 1184 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 SUN1O94901 812 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 PTPN11Q06124 597 aaPredicted RBP23.27■■□□□ 1.31
UPF3A-201ENST00000351487 Q3C1V9 767 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 CYB5D1Q6P9G0 228 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 GDAP1Q8TB36 358 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 TGS1Q96RS0 853 aaKnown RBP23.27■■□□□ 1.31
UPF3A-201ENST00000351487 IFT122Q9HBG6 1241 aa23.27■■□□□ 1.31
UPF3A-201ENST00000351487 FAM47DPA6NHR8 397 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 ERBB2P04626 1255 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 TXNP10599 105 aaKnown RBP23.26■■□□□ 1.31
UPF3A-201ENST00000351487 MCF2P10911 925 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 KDELR1P24390 212 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 ATICP31939 592 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 SLC18A1P54219 525 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 CDH8P55286 799 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 OTUD4Q01804 1114 aaKnown RBP23.26■■□□□ 1.31
UPF3A-201ENST00000351487 PLCB3Q01970 1234 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 SMTNL2Q2TAL5 461 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 IFNLR1Q8IU57 520 aaPredicted RBP23.26■■□□□ 1.31
UPF3A-201ENST00000351487 SMYD3Q9H7B4 428 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 ZWILCHQ9H900 591 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 METTL5Q9NRN9 209 aaKnown RBP23.26■■□□□ 1.31
UPF3A-201ENST00000351487 ERAP1Q9NZ08 941 aa23.26■■□□□ 1.31
UPF3A-201ENST00000351487 PHKA2P46019 1235 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 GABRB2P47870 512 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 TNFAIP2Q03169 654 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ACAP1Q15027 740 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ZBTB10Q96DT7 871 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 CLMNQ96JQ2 1002 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 TWNKQ96RR1 684 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 PLCD4Q9BRC7 762 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 CYP3A43Q9HB55 503 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ABCF3Q9NUQ8 709 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 SENP1Q9P0U3 644 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 LACTBL1A8MY62 500 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 CST8O60676 142 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 IFNB1P01574 187 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 STAG3L1P0CL83 205 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 TTLL4Q14679 1199 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 AMHR2Q16671 573 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 JADE1Q6IE81 842 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 SPATA21Q7Z572 469 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ANKRD13AQ8IZ07 590 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ZBED8Q8IZ13 594 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 MCRS1Q96EZ8 462 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ELOVL4Q9GZR5 314 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 ASB7Q9H672 318 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 HMGXB4Q9UGU5 601 aa23.25■■□□□ 1.31
UPF3A-201ENST00000351487 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.25■■□□□ 1.31
UPF3A-201ENST00000351487 PRPF4O43172 522 aaKnown RBP eCLIP23.24■■□□□ 1.313e-7■■■□□ 17.1
UPF3A-201ENST00000351487 ITGB3P05106 788 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 SF3A3Q12874 501 aaKnown RBP eCLIP23.24■■□□□ 1.314e-6■■■■□ 22.2
UPF3A-201ENST00000351487 SWT1Q5T5J6 900 aaKnown RBP23.24■■□□□ 1.31
UPF3A-201ENST00000351487 RNPEPQ9H4A4 650 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 MROH8Q9H579 483 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 ARL2BPQ9Y2Y0 163 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 MICAL2O94851 1124 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 MYO1EQ12965 1108 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 PDIA2Q13087 525 aaKnown RBP23.24■■□□□ 1.31
UPF3A-201ENST00000351487 MOGSQ13724 837 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 HIF1AQ16665 826 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 KCNT1Q5JUK3 1230 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 ZNF484Q5JVG2 852 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 PPIL6Q8IXY8 311 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 LINC01465Q8N7H1 131 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 CMASQ8NFW8 434 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-201ENST00000351487 TMEM176AQ96HP8 235 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 SYNCQ9H7C4 482 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 PRKAG3Q9UGI9 489 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 FETUBQ9UGM5 382 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 SLC24A2Q9UI40 661 aa23.24■■□□□ 1.31
UPF3A-201ENST00000351487 PLXNA1Q9UIW2 1896 aa23.23■■□□□ 1.31
UPF3A-201ENST00000351487 CTCFP49711 727 aaPredicted RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms