RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 CA8P35219 290 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 MRPS35P82673 323 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 FAAP100Q0VG06 881 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 EFTUD2Q15029 972 aaKnown RBP eCLIP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 EML3Q32P44 896 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 THEMIS2Q5TEJ8 643 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 RWDD4Q6NW29 188 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 RIBC1Q8N443 379 aaPredicted RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 TEX9Q8N6V9 391 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 LRRC4CQ9HCJ2 640 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 PFDN4Q9NQP4 134 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 MTO1Q9Y2Z2 717 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 PCDHA2Q9Y5H9 948 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 MRPL42Q9Y6G3 142 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 APOL1O14791 398 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 JAM2P57087 298 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 NBPF20Q3BBV1 942 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 TMEM259Q4ZIN3 620 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 ZNF572Q7Z3I7 529 aaPredicted RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 PRPF31Q8WWY3 499 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 KIF12Q96FN5 646 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 GTSE1Q9NYZ3 720 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 CASZ1Q86V15 1759 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 A8MXQ7 604 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 ADCY3O60266 1144 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 ITGB3P05106 788 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 MED21Q13503 144 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 HABP4Q5JVS0 413 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 ECHDC2Q86YB7 292 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 SH3GL3Q99963 347 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 UNKQ9C0B0 810 aaKnown RBP12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 GGA2Q9UJY4 613 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 KDM3BQ7LBC6 1761 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 KBTBD13C9JR72 458 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 GIPC1O14908 333 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 CALB2P22676 271 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 VCPP55072 806 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 PTK6Q13882 451 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 UBAP2Q5T6F2 1119 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 RTKN2Q8IZC4 609 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 EFCAB3Q8N7B9 438 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 RNF148Q8N7C7 305 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 NETO2Q8NC67 525 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 ALKBH8Q96BT7 664 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SPATA33Q96N06 139 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 LRRC19Q9H756 370 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 FAM237BA0A1B0GVD1 139 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 FCHO1O14526 889 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 CLK2P49760 499 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 RPL10AP62906 217 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SURF1Q15526 300 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 KBTBD12Q3ZCT8 623 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 RSBN1LQ6PCB5 846 aaPredicted RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 BZW1Q7L1Q6 419 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 CATSPER4Q7RTX7 472 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 ZNF677Q86XU0 584 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 STK32AQ8WU08 396 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 TLCD1Q96CP7 247 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SGF29Q96ES7 293 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SIK2Q9H0K1 926 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 NUB1Q9Y5A7 615 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 ZC3H4Q9UPT8 1303 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 GOLGA8QA0A0J9YX86 632 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 GOLGA8OA6NCC3 632 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 GOLGA8NF8WBI6 632 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 KRT36O76013 467 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 MORF4L2Q15014 288 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 DALRD3Q5D0E6 543 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 IZUMO2Q6UXV1 221 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SLFN11Q7Z7L1 901 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 LCA5Q86VQ0 697 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 C4orf19Q8IY42 314 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 SIX6OS1Q8N1H7 587 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 ICA1LQ8NDH6 482 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 TMA16Q96EY4 203 aaKnown RBP12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 RNPEPL1Q9HAU8 725 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 BCAP29Q9UHQ4 241 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 MCM8Q9UJA3 840 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 MYH15Q9Y2K3 1946 aa12.97□□□□□ -0.33
SNRNP48-201ENST00000342415 FSCN2O14926 492 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 AVILO75366 819 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 PTDSS1P48651 473 aaKnown RBP12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 MAMLD1Q13495 774 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 OR5B17Q8NGF7 314 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 APOL2Q9BQE5 337 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 TEX13BQ9BXU2 312 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 RFC1P35251 1148 aaPredicted RBP12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 CLCN3P51790 818 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 IRX1P78414 480 aaPredicted RBP12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 OCRLQ01968 901 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 SLC1A5Q15758 541 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 BMT2Q1RMZ1 405 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 GLRA4Q5JXX5 417 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 DACT2Q5SW24 774 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 CHADLQ6NUI6 762 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 C16orf46Q6P387 395 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 CES3Q6UWW8 571 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 NPNTQ6UXI9 565 aa12.96□□□□□ -0.33
SNRNP48-201ENST00000342415 TMC2Q8TDI7 906 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms