RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FAM49BQ9NUQ9 324 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 KCNH4Q9UQ05 1017 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 ANK1P16157 1881 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 YWHAEP62258 255 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MMRN1Q13201 1228 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MPP2Q14168 576 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 PIGHQ14442 188 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 CNGA2Q16280 664 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 C15orf59Q2T9L4 293 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 OR6B2Q6IFH4 312 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 SCYL2Q6P3W7 929 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MAMDC4Q6UXC1 1216 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 ARMC9Q7Z3E5 817 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 DPP9Q86TI2 863 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 RFX6Q8HWS3 928 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 CCDC13Q8IYE1 715 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 CCDC33Q8N5R6 958 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 KCTD6Q8NC69 237 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 KIF12Q96FN5 646 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 PRMT7Q9NVM4 692 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 GPATCH2LQ9NWQ4 482 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 NAALADL1Q9UQQ1 740 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 HCRTO43612 131 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 GAS2O43903 313 aaKnown RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 CDKN2BP42772 138 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 NDST1P52848 882 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 DPY19L2Q6NUT2 758 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ZC3H18Q86VM9 953 aaKnown RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 OSBPL7Q9BZF2 842 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 MROH8Q9H579 483 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 KIF9Q9HAQ2 790 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 HOMER3Q9NSC5 361 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 SETD4Q9NVD3 440 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ASB14A6NK59 587 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 TCP11X1B4DZS4 312 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 H3BRB1 525 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PPEF2O14830 753 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ADCY6O43306 1168 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 SNAPC2Q13487 334 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 TMEM132DQ14C87 1099 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PRAMEF19Q5SWL8 479 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 TAPT1Q6NXT6 567 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 NPNTQ6UXI9 565 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 SYDE1Q6ZW31 735 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 GPRC5AQ8NFJ5 357 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 LENG1Q96BZ8 264 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 TMEM176AQ96HP8 235 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ADPGKQ9BRR6 497 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 TUT1Q9H6E5 874 aaKnown RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 FGFR1OP2Q9NVK5 253 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 EXOC1LA0A1B0GW35 172 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PDHXO00330 501 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PDIA2Q13087 525 aaKnown RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PPP1R15BQ5SWA1 713 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 HIBCHQ6NVY1 386 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 VSTM1Q6UX27 236 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ILDR2Q71H61 639 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 SESTD1Q86VW0 696 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 XYLT1Q86Y38 959 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 ZNF317Q96PQ6 595 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 STMN4Q9H169 189 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-201ENST00000341247 DOCK3Q8IZD9 2030 aa10.88□□□□□ -0.67
LIMA1-201ENST00000341247 PAEPP09466 180 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 MIPP30301 263 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 VCPP55072 806 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 GRM1Q13255 1194 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ANKRD22Q5VYY1 191 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ALLCQ8N6M5 410 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 PCDHGC3Q9UN70 934 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 VGLL3A8MV65 326 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 RASA4BC9J798 803 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 DNALI1O14645 258 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 RASA4O43374 803 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 MED7O43513 233 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 IBSPP21815 317 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 NUGGCQ68CJ6 796 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ACOT1Q86TX2 421 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 C4orf33Q8N1A6 199 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 C7orf31Q8N865 590 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 FAM71DQ8N9W8 422 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ZNF518BQ9C0D4 1074 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SPON1Q9HCB6 807 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 DPP3Q9NY33 737 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 STRIP2Q9ULQ0 834 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 TPX2Q9ULW0 747 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SNX9Q9Y5X1 595 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SIGLEC16A6NMB1 481 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 E5RJQ4 531 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 DNM1LO00429 736 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 CILPO75339 1184 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 IL18RAPO95256 599 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 NPTXRO95502 500 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 BASP1P80723 227 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SLC25A11Q02978 314 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 LAMC2Q13753 1193 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 HADHQ16836 314 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 FAM133BQ5BKY9 247 aaKnown RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 C1orf228Q6PIY5 440 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms