RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ST3GAL1Q11201 340 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CNKSR3Q6P9H4 555 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 GJB7Q6PEY0 223 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 SV2AQ7L0J3 742 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 ZBTB45Q96K62 511 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 HSD17B14Q9BPX1 270 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 PYCARDQ9ULZ3 195 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 OR6C75A6NL08 312 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CHRNA3P32297 505 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 GLUD2P49448 558 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CUL1Q13616 776 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 TAF1BQ53T94 588 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 HYIQ5T013 277 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 TTI2Q6NXR4 508 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 ACSF2Q96CM8 615 aaPredicted RBP10.64□□□□□ -0.71
USP54-201ENST00000339859 PADI3Q9ULW8 664 aa10.64□□□□□ -0.71
USP54-201ENST00000339859 CFAP69A5D8W1 941 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 C3orf70A6NLC5 250 aaPredicted RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 ZBTB22O15209 634 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 OTOP2Q7RTS6 562 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 MIB1Q86YT6 1006 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 KIAA0895Q8NCT3 520 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 HDAC11Q96DB2 347 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 PABPC5Q96DU9 382 aaKnown RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP54-201ENST00000339859 E5RI56 91 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 AKAP3O75969 853 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 GLUD1P00367 558 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 GEMIN4P57678 1058 aaKnown RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 STARD3Q14849 445 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 ELF2Q15723 593 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 BOLA3Q53S33 107 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 PPP2R2DQ66LE6 453 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 TRIM42Q8IWZ5 723 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 C18orf25Q96B23 403 aaPredicted RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 PGLYRP2Q96PD5 576 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 EPB41L5Q9HCM4 733 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 GTF2IRD1Q9UHL9 959 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 MYH2Q9UKX2 1941 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 SGPL1O95470 568 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 EOMESO95936 686 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 CCNE2O96020 404 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 STX2P32856 288 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 PRAMEP78395 509 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 GLE1Q53GS7 698 aaKnown RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 TIGD7Q6NT04 549 aaPredicted RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 ZNF784Q8NCA9 323 aaPredicted RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 HHIPL1Q96JK4 782 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 BFARQ9NZS9 450 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 IQANK1A0A1B0GTG1 560 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 GOLGA8KD6RF30 607 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 SYDE1Q6ZW31 735 aaPredicted RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 RASSF3Q86WH2 238 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 PBXIP1Q96AQ6 731 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 SERPINB11Q96P15 392 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 UNC93B1Q9H1C4 597 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 TRMT13Q9NUP7 481 aaKnown RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 MAP3K13O43283 966 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 ASMTLO95671 621 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 CYP11B1P15538 503 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 TAC1P20366 129 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 CLK2P49760 499 aaKnown RBP10.63□□□□□ -0.71
USP54-201ENST00000339859 PLPP4Q5VZY2 271 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 SPOPLQ6IQ16 392 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 C4orf22Q6V702 233 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 TLE6Q9H808 572 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 TOGARAM1Q9Y4F4 1720 aa10.63□□□□□ -0.71
USP54-201ENST00000339859 NAV1Q8NEY1 1877 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 ACAT1P24752 427 aaKnown RBP10.62□□□□□ -0.71
USP54-201ENST00000339859 EPHB4P54760 987 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 GJA9P57773 515 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 CEP85LQ5SZL2 805 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 FBF1Q8TES7 1133 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TXNRD2Q9NNW7 524 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 A0A1W2PQ45 241 aaPredicted RBP10.62□□□□□ -0.71
USP54-201ENST00000339859 A0A1W2PQY0 241 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 KCNN4O15554 427 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 KRT14P02533 472 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 RHOCP08134 193 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 SPATA31C1P0DKV0 1188 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 CSH1P0DML2 217 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 CSH2P0DML3 217 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 CD44P16070 742 aaKnown RBP10.62□□□□□ -0.71
USP54-201ENST00000339859 MICAL2O94851 1124 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 ASS1P00966 412 aaKnown RBP10.62□□□□□ -0.71
USP54-201ENST00000339859 TROVE2P10155 538 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP54-201ENST00000339859 GCNT1Q02742 428 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TUSC3Q13454 348 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 SLFN11Q7Z7L1 901 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TOP6BLQ8N6T0 577 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 PLA2G4CQ9UP65 541 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 CLGNO14967 610 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TBX4P57082 545 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 ANKRD42Q8N9B4 389 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 PLCD4Q9BRC7 762 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TTPALQ9BTX7 342 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TSPAN16Q9UKR8 245 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 TM4SF4P48230 202 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 PDK2Q15119 407 aa10.62□□□□□ -0.71
USP54-201ENST00000339859 GABRQQ9UN88 632 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms