RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GATMP50440 423 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 NAP1L1P55209 391 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 BST2Q10589 180 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 ZNF268Q14587 947 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 INTS6LQ5JSJ4 861 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 KIAA0319Q5VV43 1072 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 TMEM110Q86TL2 294 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 CMTR2Q8IYT2 770 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 FUKQ8N0W3 1084 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 MYCBPAPQ8TBZ2 947 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 MCRS1Q96EZ8 462 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 CPXM1Q96SM3 734 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 CRTAC1Q9NQ79 661 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 ADAM28Q9UKQ2 775 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 SNX12Q9UMY4 172 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 MRFAP1Q9Y605 127 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 SF3B1O75533 1304 aaKnown RBP eCLIP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 ATMINO43313 823 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 ALDH2P05091 517 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 TCP1P17987 556 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 FGFR3P22607 806 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 TKTP29401 623 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 MAN1A1P33908 653 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 PLA2G4AP47712 749 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 SNX16P57768 344 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 MRPL58Q14197 206 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 MAPRE1Q15691 268 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 OVOS1Q6IE37 1185 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 PAQR9Q6ZVX9 377 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 NT5DC3Q86UY8 548 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 ZDHHC17Q8IUH5 632 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 RNF168Q8IYW5 571 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 SLC2A14Q8TDB8 520 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 IPO4Q8TEX9 1081 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 FNIP1Q8TF40 1166 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 RABGGTAQ92696 567 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 C18orf8Q96DM3 657 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 HES6Q96HZ4 224 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 HSFY1Q96LI6 401 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 OXCT2Q9BYC2 517 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 UBXN6Q9BZV1 441 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 CWH43Q9H720 699 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 FAM49BQ9NUQ9 324 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 CDC23Q9UJX2 597 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 HYOU1Q9Y4L1 999 aa15.77■□□□□ 0.12
CCDC88C-202ENST00000334448 TMEM191CA6NGB0 347 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 MIF4GDA9UHW6 222 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 F8W810 466 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 I3L4J1 428 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 XPO1O14980 1071 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 URI1O94763 535 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 ERBB2P04626 1255 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 CCDC130P13994 396 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 NPR3P17342 541 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 SSTR3P32745 418 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 SLC1A1P43005 524 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 TERF1P54274 439 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 YWHAHQ04917 246 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 PDE4CQ08493 712 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 WHAMMP3Q1A5X7 153 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 PAN2Q504Q3 1202 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 DNAJC24Q6P3W2 148 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 C16orf59Q7L2K0 433 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 DAAM2Q86T65 1068 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 XYLT1Q86Y38 959 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 THEM5Q8N1Q8 247 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 KCTD13Q8WZ19 329 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 DUSP16Q9BY84 665 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 PRKAG2Q9UGJ0 569 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 FAN1Q9Y2M0 1017 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 PRG3Q9Y2Y8 225 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 SAR1BQ9Y6B6 198 aa15.76■□□□□ 0.11
CCDC88C-202ENST00000334448 SIGLEC16A6NMB1 481 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 ATP2C2O75185 946 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 TADA2AO75478 443 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 ACAT1P24752 427 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 ACADSBP45954 432 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 BCAR1P56945 870 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 PSMC1P62191 440 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 DEFB103AP81534 67 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 TSPY1Q01534 308 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 FPGSQ05932 587 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 MDH1BQ5I0G3 518 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 PMF1Q6P1K2 205 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 FUT10Q6P4F1 479 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 PSRC1Q6PGN9 363 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 ARCQ7LC44 396 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 PEX26Q7Z412 305 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 FAM35AQ86V20 835 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 NIPA2Q8N8Q9 360 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 OR10T2Q8NGX3 314 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 UBA3Q8TBC4 463 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 FEZF2Q8TBJ5 459 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 HASPINQ8TF76 798 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 CD101Q93033 1021 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 B3GNT5Q9BYG0 378 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 CSNK1G1Q9HCP0 422 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 PNPLA8Q9NP80 782 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 ANAPC7Q9UJX3 599 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 TIMM13Q9Y5L4 95 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms