RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 MAF1Q9H063 256 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 PCDHGC3Q9UN70 934 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 AGAP1Q9UPQ3 857 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 IGKV6-21A0A0C4DH24 114 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 C3orf70A6NLC5 250 aaPredicted RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 HGSO14964 777 aaPredicted RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 PIAS1O75925 651 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CD48P09326 243 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 STX2P32856 288 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CDH5P33151 784 aaPredicted RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 GDF10P55107 478 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 Q3C1V9 767 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 WLSQ5T9L3 541 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 DRICH1Q6PGQ1 229 aaPredicted RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 SPDL1Q96EA4 605 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 TWNKQ96RR1 684 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 TGS1Q96RS0 853 aaKnown RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CCDC77Q9BR77 488 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 SDCBP2Q9H190 292 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 ELP3Q9H9T3 547 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 HMGXB4Q9UGU5 601 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 USP15Q9Y4E8 981 aaPredicted RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 ADM5C9JUS6 153 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CNMDO75829 334 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 KRT3P12035 628 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 PROZP22891 400 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 XRCC4Q13426 336 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CELF3Q5SZQ8 465 aaKnown RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 TSHZ1Q6ZSZ6 1077 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 ZBED8Q8IZ13 594 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 TCP11Q8WWU5 503 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CLMNQ96JQ2 1002 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 FAM167AQ96KS9 214 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 SPATA33Q96N06 139 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 CPXM1Q96SM3 734 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 PAIP2Q9BPZ3 127 aaKnown RBP17.22■□□□□ 0.35
SHQ1-201ENST00000325599 ZNF518BQ9C0D4 1074 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 SIX4Q9UIU6 781 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 SLC12A4Q9UP95 1085 aa17.22■□□□□ 0.35
SHQ1-201ENST00000325599 LRCH4O75427 683 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 UBOX5O94941 541 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 TNNC2P02585 160 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 NFICP08651 508 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 FOXN2P32314 431 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 TAF5Q15542 800 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 RNASEH2BQ5TBB1 312 aaKnown RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 MOB2Q70IA6 237 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 ANKMY2Q8IV38 441 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 NLGN2Q8NFZ4 835 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 ASCC2Q9H1I8 757 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 PCSK1NQ9UHG2 260 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 ACKR2O00590 384 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 DNAJC8O75937 253 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 WDR4P57081 412 aaKnown RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 PSMC1P62191 440 aaKnown RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 SLC25A11Q02978 314 aaKnown RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 CGB2Q6NT52 195 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 EFCAB12Q6NXP0 572 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 ZNF513Q8N8E2 541 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 ACTL9Q8TC94 416 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 VPS37BQ9H9H4 285 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 PDGFCQ9NRA1 345 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 AGTPBP1Q9UPW5 1226 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 DRG1Q9Y295 367 aaKnown RBP17.21■□□□□ 0.35
SHQ1-201ENST00000325599 PPP2R3BQ9Y5P8 575 aa17.21■□□□□ 0.35
SHQ1-201ENST00000325599 A0A0G2JMZ2 1700 aa17.21■□□□□ 0.34
SHQ1-201ENST00000325599 LRRC37A2A6NM11 1700 aa17.21■□□□□ 0.34
SHQ1-201ENST00000325599 ANKRD33BA6NCL7 494 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 RAD23BP54727 409 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 IGBP1P78318 339 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 OTUD4Q01804 1114 aaKnown RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 PKN2Q16513 984 aaKnown RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 FAM228AQ86W67 206 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 NIPA2Q8N8Q9 360 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 MICAL1Q8TDZ2 1067 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 ANKRD36BP1Q96IX9 119 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 CFAP57Q96MR6 1250 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 CDT1Q9H211 546 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 FZD8Q9H461 694 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 SMYD3Q9H7B4 428 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 NKIRAS1Q9NYS0 192 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 GPR25O00155 361 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 CST8O60676 142 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 LGR5O75473 907 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 EZRP15311 586 aaKnown RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 COPS2P61201 443 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 PDIA2Q13087 525 aaKnown RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 ANKRD22Q5VYY1 191 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 PARP9Q8IXQ6 854 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 C1orf127Q8N9H9 656 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 SLC35B2Q8TB61 432 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 NKD2Q969F2 451 aaPredicted RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 RNPEPQ9H4A4 650 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 METTL5Q9NRN9 209 aaKnown RBP17.2■□□□□ 0.34
SHQ1-201ENST00000325599 CSADQ9Y600 493 aa17.2■□□□□ 0.34
SHQ1-201ENST00000325599 B4GALT4O60513 344 aa17.19■□□□□ 0.34
SHQ1-201ENST00000325599 ERBB2P04626 1255 aa17.19■□□□□ 0.34
SHQ1-201ENST00000325599 ITGAVP06756 1048 aa17.19■□□□□ 0.34
SHQ1-201ENST00000325599 ABHD2P08910 425 aa17.19■□□□□ 0.34
SHQ1-201ENST00000325599 NRLP54845 237 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms