RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SUPT20HL2P0C7V6 817 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 SEPT6Q14141 434 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 FAXCQ5TGI0 409 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 DAB2IPQ5VWQ8 1189 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 LRRC71Q8N4P6 559 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 ZNF75CPQ92670 426 aaPredicted RBP15.39■□□□□ 0.05
TCOF1-201ENST00000323668 SLC5A4Q9NY91 659 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 IL18RAPO95256 599 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 NBPF20Q3BBV1 942 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 MFSD5Q6N075 450 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 CCNYL1Q8N7R7 359 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 CCDC68Q9H2F9 335 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 CALCAP01258 141 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 ZSCAN5DPP0CG00 497 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 TTLL4Q14679 1199 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 SLC26A11Q86WA9 606 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 TRIML2Q8N7C3 387 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 PGBD4Q96DM1 585 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 NT5C1AQ9BXI3 368 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 SIX2Q9NPC8 291 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 PCDHA2Q9Y5H9 948 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 SNX9Q9Y5X1 595 aa15.39■□□□□ 0.05
TCOF1-201ENST00000323668 DUOX1Q9NRD9 1551 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 IGKV6D-41A0A0C4DH26 115 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 HUS1O60921 280 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 CBX6O95503 412 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 ITGB5P18084 799 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 ADORA2BP29275 332 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 KYAT1Q16773 422 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 CDR2LQ86X02 465 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-201ENST00000323668 AGR3Q8TD06 166 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 ATXN7L3BQ96GX2 97 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 STARD13Q9Y3M8 1113 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 RNF43Q68DV7 783 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 C4orf22Q6V702 233 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 C12orf56Q8IXR9 622 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 EMC1Q8N766 993 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TMEM161BQ8NDZ6 487 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 CLMNQ96JQ2 1002 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TMEM59LQ9UK28 342 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 NOD1Q9Y239 953 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 USP20Q9Y2K6 914 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 GJB6O95452 261 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 EPHB2P29323 1055 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TMEM132DQ14C87 1099 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 KCNV1Q6PIU1 500 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 CCDC97Q96F63 343 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-201ENST00000323668 VPS39Q96JC1 886 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TMEM120AQ9BXJ8 343 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 UPF3AQ9H1J1 476 aaKnown RBP15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PFDN4Q9NQP4 134 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PNMA3Q9UL41 463 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PAEPP09466 180 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 NLRP11P59045 1033 aaKnown RBP15.38■□□□□ 0.05
TCOF1-201ENST00000323668 EFHC2Q5JST6 749 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TATDN1Q6P1N9 297 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 CMTM5Q96DZ9 223 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 KREMEN1Q96MU8 473 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PWWP2AQ96N64 755 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 TMEM109Q9BVC6 243 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PCDHAC2Q9Y5I4 1007 aa15.38■□□□□ 0.05
TCOF1-201ENST00000323668 PYGBP11216 843 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 AGBL3Q8NEM8 1001 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 STK32AQ8WU08 396 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 PRPF31Q8WWY3 499 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 XAB2Q9HCS7 855 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 MRPS9P82933 396 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 RASA2Q15283 850 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 INPP5DQ92835 1189 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 STXBP5LQ9Y2K9 1186 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 PLIN4Q96Q06 1357 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 COL1A1P02452 1464 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 LOC100653049A0A140TA62 436 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 TCRBV7S2A1N4TA0A589 114 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 PPP1R12AO14974 1030 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 KRT34O76011 436 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 BGNP21810 368 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 ADRA1DP25100 572 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 FKBP1AP62942 108 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 MAMLD1Q13495 774 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 SHROOM1Q2M3G4 852 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 JADE1Q6IE81 842 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 KLC3Q6P597 504 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 MTHFD1LQ6UB35 978 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 RAB44Q7Z6P3 723 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 WDR49Q8IV35 697 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 TEKT4Q8WW24 435 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 KCNK16Q96T55 309 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 MYOZ2Q9NPC6 264 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 A1CFQ9NQ94 594 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 AFG3L2Q9Y4W6 797 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 SCN11AQ9UI33 1791 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 F8VP50 259 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 LCP1P13796 627 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 TTC27Q6P3X3 843 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 APOBEC3FQ8IUX4 373 aaKnown RBP15.37■□□□□ 0.05
TCOF1-201ENST00000323668 RNPEPL1Q9HAU8 725 aa15.37■□□□□ 0.05
TCOF1-201ENST00000323668 SKAP2O75563 359 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms