RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RIOX1Q9H6W3 641 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 C2CD2Q9Y426 696 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 COPG1Q9Y678 874 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 FAM205AQ6ZU69 1335 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 MYL2P10916 166 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 SSTR3P32745 418 aaPredicted RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 PLEKHA7Q6IQ23 1121 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 SAMD7Q7Z3H4 446 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 TAAR1Q96RJ0 339 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 SH3GL1Q99961 368 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 CDC42EP4Q9H3Q1 356 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 DHX35Q9H5Z1 703 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 TMEM8AQ9HCN3 771 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 OLA1Q9NTK5 396 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 IGSF9BQ9UPX0 1349 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 HMOX2P30519 316 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 SREBF1P36956 1147 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 PPIL6Q8IXY8 311 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 CHST13Q8NET6 341 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 TUBGCP3Q96CW5 907 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 C18orf8Q96DM3 657 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 GMCL1Q96IK5 515 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 PARVBQ9HBI1 364 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 TRIM49D1C9J1S8 452 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 MED24O75448 989 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 DGKIO75912 1065 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 XPAP23025 273 aaPredicted RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 ADORA2BP29275 332 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 ADARP55265 1226 aaKnown RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 PID1Q7Z2X4 250 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 ZFRQ96KR1 1074 aaKnown RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 FAM58BPP0C7Q3 252 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 THRAP10827 490 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 ZNF844Q08AG5 666 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 RASA2Q15283 850 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SGSM1Q2NKQ1 1148 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 DEPDC1Q5TB30 811 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 MEI1Q5TIA1 1274 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 TTI2Q6NXR4 508 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 LRRC74BQ6ZQY2 392 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 LPCAT2Q7L5N7 544 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SCN4BQ8IWT1 228 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 GPRASP2Q96D09 838 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SPON1Q9HCB6 807 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 AGPAT3Q9NRZ7 376 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 PAK5Q9P286 719 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SPRP35270 261 aaPredicted RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 STX5Q13190 355 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 PIGHQ14442 188 aaPredicted RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 UGP2Q16851 508 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 CPA5Q8WXQ8 436 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 RUSC1Q9BVN2 902 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 FRMD8Q9BZ67 464 aaPredicted RBP11.97□□□□□ -0.49
VPS39-201ENST00000318006 AGAP1Q9UPQ3 857 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 PCDHB2Q9Y5E7 798 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 TULP2O00295 520 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SLC25A27O95847 323 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 LRRC6Q86X45 466 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 HOMEZQ8IX15 550 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 VGLL2Q8N8G2 317 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 PGBD4Q96DM1 585 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 SHCBP1LQ9BZQ2 653 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 WDR35Q9P2L0 1181 aa11.97□□□□□ -0.49
VPS39-201ENST00000318006 MAGEB2O15479 319 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 ATP9BO43861 1147 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 USP1O94782 785 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 C16orf72Q14CZ0 275 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 TMC5Q6UXY8 1006 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 OR6J1Q8NGC5 347 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 FAM118BQ9BPY3 351 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 VPS33BQ9H267 617 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 TASP1Q9H6P5 420 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 CAB39Q9Y376 341 aaPredicted RBP11.96□□□□□ -0.49
VPS39-201ENST00000318006 POLRMTO00411 1230 aaKnown RBP11.96□□□□□ -0.49
VPS39-201ENST00000318006 WBP4O75554 376 aaKnown RBP11.96□□□□□ -0.49
VPS39-201ENST00000318006 HLA-DRAP01903 254 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 EIF2B2P49770 351 aaKnown RBP11.96□□□□□ -0.49
VPS39-201ENST00000318006 RBP5P82980 135 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 CDC42EP1Q00587 391 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 EFHC2Q5JST6 749 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 TMPRSS6Q8IU80 811 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 RNF217Q8TC41 542 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 TNIP3Q96KP6 325 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 BTBD10Q9BSF8 475 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 TMEM120AQ9BXJ8 343 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 C17orf75Q9HAS0 396 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.96□□□□□ -0.49
VPS39-201ENST00000318006 HACL1Q9UJ83 578 aa11.96□□□□□ -0.49
VPS39-201ENST00000318006 DDTLA6NHG4 134 aaPredicted RBP11.96□□□□□ -0.5
VPS39-201ENST00000318006 AP3B1O00203 1094 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 ZBTB24O43167 697 aaPredicted RBP11.96□□□□□ -0.5
VPS39-201ENST00000318006 UBE3AQ05086 875 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 TBX2Q13207 712 aaPredicted RBP11.96□□□□□ -0.5
VPS39-201ENST00000318006 DCTN2Q13561 401 aaKnown RBP11.96□□□□□ -0.5
VPS39-201ENST00000318006 SYCP2LQ5T4T6 812 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 GMCL1P1Q8NEA9 526 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 AGAP11Q8TF27 550 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 RNPEPL1Q9HAU8 725 aa11.96□□□□□ -0.5
VPS39-201ENST00000318006 IL17RBQ9NRM6 502 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms