RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 BMS1Q14692 1282 aaKnown RBP19.3■□□□□ 0.68
HMGA1-201ENST00000311487 SFMBT2Q5VUG0 894 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 SLC8B1Q6J4K2 584 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 NOP9Q86U38 636 aaKnown RBP19.3■□□□□ 0.68
HMGA1-201ENST00000311487 MYCBPAPQ8TBZ2 947 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 MRPL38Q96DV4 380 aaKnown RBP19.3■□□□□ 0.68
HMGA1-201ENST00000311487 TNIP3Q96KP6 325 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 TLE6Q9H808 572 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 TMEM30AQ9NV96 361 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 BACE2Q9Y5Z0 518 aa19.3■□□□□ 0.68
HMGA1-201ENST00000311487 OR6C75A6NL08 312 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 BEST1O76090 585 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 SEC24AO95486 1093 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CYP11B1P15538 503 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 EPCAMP16422 314 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 ZBED6P86452 979 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 FIGNQ5HY92 759 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 FAM171BQ6P995 826 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 PAQR9Q6ZVX9 377 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CRYBG2Q8N1P7 616 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 DEFB123Q8N688 67 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 ZNF397Q8NF99 534 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 MYLIPQ8WY64 445 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 FAXDC2Q96IV6 333 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 KCNK16Q96T55 309 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 EMILIN2Q9BXX0 1053 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CNTN6Q9UQ52 1028 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 A0A1W2PQJ5 194 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 AKR1B15C9JRZ8 316 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 MFAP3LO75121 409 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CLASP2O75122 1294 aaKnown RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 NDUFV1P49821 464 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CCZ1BP86790 482 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CCZ1P86791 482 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CCDC85BQ15834 202 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 PTPROQ16827 1216 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 TCEAL5Q5H9L2 206 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 EP400NLQ6ZTU2 488 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 IRF2BP2Q7Z5L9 587 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 DNAAF5Q86Y56 855 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 SPATA2LQ8IUW3 424 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 FUKQ8N0W3 1084 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 PPM1EQ8WY54 764 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 FAM81BQ96LP2 452 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 SEPT5Q99719 369 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-201ENST00000311487 CYP4F11Q9HBI6 524 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 RXFP1Q9HBX9 757 aa19.29■□□□□ 0.68
HMGA1-201ENST00000311487 MTMR11A4FU01 709 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 PIK3R2O00459 728 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 MMEP08473 750 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 PTK2Q05397 1052 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 GPR17Q13304 367 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 ASIC2Q16515 512 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 DDR2Q16832 855 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 GOLGA7BQ2TAP0 167 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 SGO2Q562F6 1265 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 DCP1BQ8IZD4 617 aaKnown RBP19.28■□□□□ 0.68
HMGA1-201ENST00000311487 TC2NQ8N9U0 490 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 ZNF461Q8TAF7 563 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 ZNF606Q8WXB4 792 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 SEPT11Q9NVA2 429 aaKnown RBP19.28■□□□□ 0.68
HMGA1-201ENST00000311487 TSPAN16Q9UKR8 245 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 SSX2IPQ9Y2D8 614 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 IRAK3Q9Y616 596 aa19.28■□□□□ 0.68
HMGA1-201ENST00000311487 TULP2O00295 520 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 LINC01565O15544 149 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 ADH1AP07327 375 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 TPM1P09493 284 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 CLCN4P51793 760 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 MGAT5BQ3V5L5 792 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 SCN4BQ8IWT1 228 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 HAUS4Q9H6D7 363 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.27■□□□□ 0.687e-16■■□□□ 11.5
HMGA1-201ENST00000311487 KRT82Q9NSB4 513 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 ABHD10Q9NUJ1 306 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 FNIP2Q9P278 1114 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 STK39Q9UEW8 545 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 MTCH2Q9Y6C9 303 aa19.27■□□□□ 0.68
HMGA1-201ENST00000311487 FAM163BP0C2L3 166 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 MAP3K7CLP57077 242 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 RAB33AQ14088 237 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 WDR59Q6PJI9 974 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 VN1R2Q8NFZ6 395 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 EPS8L1Q8TE68 723 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 CDX2Q99626 313 aaPredicted RBP19.27■□□□□ 0.67
HMGA1-201ENST00000311487 APOL5Q9BWW9 433 aa19.27■□□□□ 0.67
HMGA1-201ENST00000311487 PRRG1O14668 218 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 MICAL2O94851 1124 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 ABLIM3O94929 683 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 PAEPP09466 180 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 VDRP11473 427 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 PDE6CP51160 858 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 TRIM14Q14142 442 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 GLIPR1L2Q4G1C9 344 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 TDRD12Q587J7 1177 aaKnown RBP19.26■□□□□ 0.67
HMGA1-201ENST00000311487 DENND1BQ6P3S1 775 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 FAM35AQ86V20 835 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 TTC30AQ86WT1 665 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 TTC39CQ8N584 583 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 OR8K1Q8NGG5 319 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms