RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SLITRK1Q96PX8 696 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 BCO2Q9BYV7 579 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 ARHGAP39Q9C0H5 1083 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 NGRNQ9NPE2 291 aaKnown RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 BARX2Q9UMQ3 279 aaPredicted RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 NFS1Q9Y697 457 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 SYNJ2BP-COX16A0A087WUM0 186 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 LOC102724159A0A0B4J2E5 919 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 A6NJR5 290 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 PDGFRAP16234 1089 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 NRLP54845 237 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 PIGHQ14442 188 aaPredicted RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 PWP2Q15269 919 aaKnown RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 LONRF1Q17RB8 773 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 CCDC142Q17RM4 750 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 KATNAL2Q8IYT4 538 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 EXD1Q8NHP7 514 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 IPO4Q8TEX9 1081 aaKnown RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 SEC14L1Q92503 715 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 KCNN1Q92952 543 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 C9orf72Q96LT7 481 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 ZFP42Q96MM3 310 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 PABPC3Q9H361 631 aaKnown RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 GPATCH2LQ9NWQ4 482 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 COX16Q9P0S2 106 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 STRIP2Q9ULQ0 834 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 LOC285556D6RIA3 1793 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RNF8O76064 485 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 TJP3O95049 919 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 ZNF865P0CJ78 1059 aaPredicted RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 RARBP10826 455 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 CCDC130P13994 396 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 DARSP14868 501 aaKnown RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 MMRN1Q13201 1228 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 BYSLQ13895 437 aaKnown RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 FSCN1Q16658 493 aaKnown RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 SPOCD1Q6ZMY3 1216 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 ZNF410Q86VK4 478 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 XYLT1Q86Y38 959 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RFX6Q8HWS3 928 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RCOR2Q8IZ40 523 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 CFAP57Q96MR6 1250 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 ZNF518BQ9C0D4 1074 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■■ 27.8
CUX1-202ENST00000292538 PSD3Q9NYI0 1048 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 ITGA11Q9UKX5 1188 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 GNEQ9Y223 722 aaKnown RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 CST8O60676 142 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 PPFIA2O75334 1257 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 LRCH4O75427 683 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 LCP1P13796 627 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 CYP3A5P20815 502 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 LMO2P25791 158 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 ARSEP51690 589 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RABGGTBP53611 331 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 IFI35P80217 286 aaPredicted RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 GPS1Q13098 491 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 CRHR2Q13324 411 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 SNX17Q15036 470 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 CYP1B1Q16678 543 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 IZUMO3Q5VZ72 239 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 TAX1BP1Q86VP1 789 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RASAL3Q86YV0 1011 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 BEST2Q8NFU1 509 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 GRK7Q8WTQ7 553 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 MAIP1Q8WWC4 291 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■■ 94
CUX1-202ENST00000292538 SNF8Q96H20 258 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 RBM41Q96IZ5 413 aaKnown RBP12.09□□□□□ -0.47
CUX1-202ENST00000292538 PCDHGC3Q9UN70 934 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.09□□□□□ -0.47
CUX1-202ENST00000292538 A0A0G2JMZ2 1700 aa12.09□□□□□ -0.47
CUX1-202ENST00000292538 C17orf102A2RUQ5 167 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 MEIS3P2A8K0S8 358 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 HMGB1P1B2RPK0 211 aaPredicted RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 E7EVH7 732 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 NDUFAB1O14561 156 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 RGS16O15492 202 aaPredicted RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 PIAS1O75925 651 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 F2P00734 622 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 IGFBP6P24592 240 aaPredicted RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 ACAT1P24752 427 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 GRM5P41594 1212 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 GPD2P43304 727 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 POU5F1BQ06416 359 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 HADHQ16836 314 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 MORN1Q5T089 497 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 PMF1Q6P1K2 205 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 ZC3H18Q86VM9 953 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 ARFGAP1Q8N6T3 406 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 CXorf38Q8TB03 319 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 MGARPQ8TDB4 240 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 SIGLEC16A6NMB1 481 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 PAEPP09466 180 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 VDRP11473 427 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 MIPP30301 263 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 ATICP31939 592 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 CPT1AP50416 773 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 TFDP3Q5H9I0 405 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 FAM183BPQ6ZVS7 135 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms