RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 CCT8P50990 548 aa9.69□□□□□ -0.86
CUX1-201ENST00000292535 SKP1P63208 163 aa9.69□□□□□ -0.86
CUX1-201ENST00000292535 EFHC1Q5JVL4 640 aa9.69□□□□□ -0.86
CUX1-201ENST00000292535 RFX8Q6ZV50 586 aa9.69□□□□□ -0.86
CUX1-201ENST00000292535 FHDC1Q9C0D6 1143 aaPredicted RBP9.69□□□□□ -0.86
CUX1-201ENST00000292535 POLEQ07864 2286 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 C17orf102A2RUQ5 167 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 GPR182O15218 404 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 PSMD7P51665 324 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CYP51A1Q16850 503 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 MRNIPQ6NTE8 343 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CLYBLQ8N0X4 340 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 C17orf75Q9HAS0 396 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 PDP2Q9P2J9 529 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KLHL20Q9Y2M5 609 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 H7C1W4 665 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ZNF200P98182 395 aaPredicted RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 SPATA21Q7Z572 469 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ZNF280CQ8ND82 737 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KANSL1LA0AUZ9 987 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ALDH6A1Q02252 535 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 MMRN1Q13201 1228 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 XKR3Q5GH77 459 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 MINPP1Q9UNW1 487 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 SMIM31A0A1B0GVY4 71 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 FNTAP49354 379 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 HNMTP50135 292 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CYB5R4Q7L1T6 521 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 DHX40Q8IX18 779 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 C1orf54Q8WWF1 131 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 FLT1P17948 1338 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 SNRPAP09012 282 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 CCND1P24385 295 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 BFSP2Q13515 415 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KDELC2Q7Z4H8 507 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CASP10Q92851 521 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CENPTQ96BT3 561 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 V9GYQ6 96 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 PDGFRBP09619 1106 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ATF7IP2Q5U623 682 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CARNS1A5YM72 827 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 PRDX5P30044 214 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ARMCX4Q5H9R4 360 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 STRIP1Q5VSL9 837 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 PLA2G4FQ68DD2 849 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ERP27Q96DN0 273 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KLC4Q9NSK0 619 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 UPP2O95045 317 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 ACADMP11310 421 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KPNA1P52294 538 aaPredicted RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 ITGA9Q13797 1035 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 LONP2Q86WA8 852 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 MRPS31Q92665 395 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 TMEM8AQ9HCN3 771 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 NPHS2Q9NP85 383 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 DRG1Q9Y295 367 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 KIF1CO43896 1103 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 SMTNL2Q2TAL5 461 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 CCDC144BQ3MJ40 725 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 RIN2Q8WYP3 895 aaPredicted RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 FAM167BQ9BTA0 163 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 MKNK1Q9BUB5 465 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 OSBPL8Q9BZF1 889 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 MUTP22033 750 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 KPNB1Q14974 876 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 GLB1LQ6UWU2 654 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 LDHDQ86WU2 507 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 EPN3Q9H201 632 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 GSTM1P09488 218 aa9.68□□□□□ -0.86
CUX1-201ENST00000292535 RPS7P62081 194 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 GSPT2Q8IYD1 628 aaKnown RBP9.68□□□□□ -0.86
CUX1-201ENST00000292535 A0A1B0GTH6 734 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ESYT3A0FGR9 886 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 PSMC6P62333 389 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ATP2C1P98194 919 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 PRKCEQ02156 737 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 NEK10Q6ZWH5 1172 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SYNE4Q8N205 404 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 PLEKHF1Q96S99 279 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 VWA5AO00534 786 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 MZF1P28698 734 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 CNGA2Q16280 664 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 DDI1Q8WTU0 396 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 RNF112Q9ULX5 631 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 TSC22D4Q9Y3Q8 395 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 TMEM191CA6NGB0 347 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 TRPM8Q7Z2W7 1104 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 DSG4Q86SJ6 1040 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 IPMKQ8NFU5 416 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 RDM1Q8NG50 284 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 RRN3P2A6NIE6 340 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 LTKP29376 864 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 FDFT1P37268 417 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 RENBPP51606 427 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 DSG1Q02413 1049 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 STARD3Q14849 445 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 IFNEQ86WN2 208 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 BLOC1S5Q8TDH9 187 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 UBXN6Q9BZV1 441 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 PLA2G4CQ9UP65 541 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms