RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 RAP1GAPP47736 663 aa17.46■□□□□ 0.38
PHRF1-201ENST00000264555 ACTN3Q08043 901 aaPredicted RBP17.46■□□□□ 0.38
PHRF1-201ENST00000264555 C9orf131Q5VYM1 1079 aa17.46■□□□□ 0.38
PHRF1-201ENST00000264555 MYCBPAPQ8TBZ2 947 aa17.46■□□□□ 0.38
PHRF1-201ENST00000264555 PCMTD2Q9NV79 361 aa17.46■□□□□ 0.38
PHRF1-201ENST00000264555 KLK14Q9P0G3 267 aa17.46■□□□□ 0.38
PHRF1-201ENST00000264555 SASH3O75995 380 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 SPRP35270 261 aaPredicted RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 ERVK-9P63128 1117 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 CACNB2Q08289 660 aaPredicted RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 IRF2BP1Q8IU81 584 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 PDZD8Q8NEN9 1154 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 ITGA11Q9UKX5 1188 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 NCAM1P13591 858 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 INSRRP14616 1297 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 CNTN2Q02246 1040 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 NSUN2Q08J23 767 aaKnown RBP eCLIP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 MTM1Q13496 603 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 GLB1LQ6UWU2 654 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 DCP1BQ8IZD4 617 aaKnown RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 ZSCAN5CA6NGD5 496 aaPredicted RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 ACKR2O00590 384 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 FDFT1P37268 417 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 AGGF1Q8N302 714 aaeCLIP17.45■□□□□ 0.388e-7■□□□□ 10.2
PHRF1-201ENST00000264555 USP18Q9UMW8 372 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 TISP43B9A030 160 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 H3BRB1 525 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 GNGT2O14610 69 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 CLGNO14967 610 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 NKRFO15226 690 aaKnown RBP eCLIP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 PPP1R11O60927 126 aaPredicted RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 PYGMP11217 842 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 AP2B1P63010 937 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 REPS2Q8NFH8 660 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 SH3TC2Q8TF17 1288 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 KLF6Q99612 283 aaPredicted RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 TUT1Q9H6E5 874 aaKnown RBP17.45■□□□□ 0.38
PHRF1-201ENST00000264555 CATSPERBQ9H7T0 1116 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 NDE1Q9NXR1 346 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 NSMCE4AQ9NXX6 385 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 KCNH4Q9UQ05 1017 aa17.45■□□□□ 0.38
PHRF1-201ENST00000264555 SMIM24O75264 130 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 MARSP56192 900 aaKnown RBP17.44■□□□□ 0.38
PHRF1-201ENST00000264555 DLG4P78352 724 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 RAET1EQ8TD07 263 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 GLIS2Q9BZE0 524 aaPredicted RBP17.44■□□□□ 0.38
PHRF1-201ENST00000264555 PORCNQ9H237 461 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 AMHR2Q16671 573 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 CATSPERGQ6ZRH7 1159 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 GRID1Q9ULK0 1009 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 MTO1Q9Y2Z2 717 aaKnown RBP17.44■□□□□ 0.38
PHRF1-201ENST00000264555 BCAT1P54687 386 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 CORO7P57737 925 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 VEPH1Q14D04 833 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 ELMOD1Q8N336 334 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 EIF1ADQ8N9N8 165 aaKnown RBP17.44■□□□□ 0.38
PHRF1-201ENST00000264555 MANSC1Q9H8J5 431 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 TOPAZ1Q8N9V7 1692 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 RGS2P41220 211 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 RECQLP46063 649 aaPredicted RBP17.44■□□□□ 0.38
PHRF1-201ENST00000264555 RNF135Q8IUD6 432 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 LRRC34Q8IZ02 419 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 FAM172AQ8WUF8 416 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 ERP27Q96DN0 273 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 STAMBPL1Q96FJ0 436 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 ZBTB18Q99592 522 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 DCLK3Q9C098 648 aa17.44■□□□□ 0.38
PHRF1-201ENST00000264555 RCCD1A6NED2 376 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TRIM66O15016 1216 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 CCDC60Q8IWA6 550 aaPredicted RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 USP33Q8TEY7 942 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 ASB7Q9H672 318 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 CYP39A1Q9NYL5 469 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 PPATQ06203 517 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 MAPRE1Q15691 268 aaKnown RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 ARSHQ5FYA8 562 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 EPS8L1Q8TE68 723 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 DRC3Q9H069 523 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 EML4Q9HC35 981 aaKnown RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 M0QYT0 321 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 KRT4P19013 534 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 AARSP49588 968 aaKnown RBP eCLIP17.43■□□□□ 0.384e-41■■■□□ 15
PHRF1-201ENST00000264555 KDELC2Q7Z4H8 507 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TMEM121Q9BTD3 319 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 ASCC2Q9H1I8 757 aaPredicted RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TMEM134Q9H6X4 195 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 E5RI56 91 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 MAP2K7O14733 419 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 NVLO15381 856 aaKnown RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 DDNO94850 711 aaPredicted RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 ITGB5P18084 799 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 PGM1P36871 562 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 BIRC2Q13490 618 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TMC3Q7Z5M5 1100 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TMEM139Q8IV31 216 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 FBXO36Q8NEA4 188 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 PTPRN2Q92932 1015 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 RMDN1Q96DB5 314 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 DDX50Q9BQ39 737 aaKnown RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 VAV3Q9UKW4 847 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms