RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 GEMP55040 296 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PDK2Q15119 407 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PPM1NQ8N819 430 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 CATSPER1Q8NEC5 780 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 DACT3Q96B18 629 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 ENTPD7Q9NQZ7 604 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 THG1LQ9NWX6 298 aaKnown RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 UXTQ9UBK9 157 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 SERPINB1P30740 379 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 SERPINB10P48595 397 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 MED21Q13503 144 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 ADRM1Q16186 407 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 GRAMD1BQ3KR37 738 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 PRUNE1Q86TP1 453 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 LONP2Q86WA8 852 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 CATSPER3Q86XQ3 398 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 AGGF1Q8N302 714 aaeCLIP13.29□□□□□ -0.28
USP40-201ENST00000251722 RIBC1Q8N443 379 aaPredicted RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 YME1L1Q96TA2 773 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 THP07101 528 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 MYBL2P10244 700 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 BCAT1P54687 386 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 NAA30Q147X3 362 aaPredicted RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 C10orf120Q5SQS8 335 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 MAML1Q92585 1016 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 HMX1Q9NP08 348 aaPredicted RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 KCNQ5Q9NR82 932 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 TEKT2Q9UIF3 430 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 FIS1Q9Y3D6 152 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 EFCAB14O75071 495 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 NPM3O75607 178 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 RHOBTB1O94844 696 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 ARSEP51690 589 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 PDAP1Q13442 181 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 CUL2Q13617 745 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 EFTUD2Q15029 972 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP40-201ENST00000251722 FBXL16Q8N461 479 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 RNPC3Q96LT9 517 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 NAGPAQ9UK23 515 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 TMA7Q9Y2S6 64 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 RWDD3Q9Y3V2 267 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 F5H5T6 163 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 PSTPIP1O43586 416 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 TRIM16LQ309B1 348 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 PLA2G4FQ68DD2 849 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 ICA1LQ8NDH6 482 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 ANKS1AQ92625 1134 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 TRAPPC9Q96Q05 1148 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 ELAC2Q9BQ52 826 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 AGO4Q9HCK5 861 aaKnown RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 ATXN10Q9UBB4 475 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 FBXO9Q9UK97 447 aaPredicted RBP13.29□□□□□ -0.28
USP40-201ENST00000251722 PKP3Q9Y446 797 aa13.29□□□□□ -0.28
USP40-201ENST00000251722 LIN7AO14910 233 aaPredicted RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 LBRQ14739 615 aaKnown RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 RBBP7Q16576 425 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 DCAF6Q58WW2 860 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 COG1Q8WTW3 980 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 OSCP1Q8WVF1 389 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SYBUQ9NX95 663 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 IGF2BP3O00425 579 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP40-201ENST00000251722 MYBP10242 640 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ZDHHC17Q8IUH5 632 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 NCLNQ969V3 563 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 TTC17Q96AE7 1141 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 NMRK1Q9NWW6 199 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ARHGEF38Q9NXL2 777 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SELENONQ9NZV5 590 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SH3GLB1Q9Y371 365 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 KCNN4O15554 427 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ANGPTL8Q6UXH0 198 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 FEZF2Q8TBJ5 459 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SLC26A7Q8TE54 656 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 HNRNPLLQ8WVV9 542 aaKnown RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 HPS3Q969F9 1004 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 CINPQ9BW66 212 aaPredicted RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 SARS2Q9NP81 518 aaKnown RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 ABCF3Q9NUQ8 709 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 TRIM16O95361 564 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 AKT1P31749 480 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SPRP35270 261 aaPredicted RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 CDH18Q13634 790 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 UNC45BQ8IWX7 931 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 FAM9CQ8IZT9 166 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ST13P5Q8NFI4 369 aaPredicted RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 UROC1Q96N76 676 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ERGIC2Q96RQ1 377 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SRPK1Q96SB4 655 aaKnown RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 SLC15A5A6NIM6 579 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 KRT6AP02538 564 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 KRT6BP04259 564 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 STIP1P31948 543 aaKnown RBP13.28□□□□□ -0.28
USP40-201ENST00000251722 KRT6CP48668 564 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 AARSP49588 968 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP40-201ENST00000251722 RENBPP51606 427 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 IL1RL1Q01638 556 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 ZBED8Q8IZ13 594 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 SPIRE2Q8WWL2 714 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 PDCD2LQ9BRP1 358 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 AGPAT3Q9NRZ7 376 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms