RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NUP85Q9BW27 656 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 CWH43Q9H720 699 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 GOLGA6AQ9NYA3 693 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 DNAJB4Q9UDY4 337 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 DBR1Q9UK59 544 aaKnown RBP9.19□□□□□ -0.94
VPS4B-201ENST00000238497 RAB21Q9UL25 225 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 SNX24Q9Y343 169 aa9.19□□□□□ -0.94
VPS4B-201ENST00000238497 C5orf67F2Z3F1 127 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 PJA2O43164 708 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CXCL14O95715 111 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 ALDH2P05091 517 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 WEE2P0C1S8 567 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 TNFSF9P41273 254 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 PLTPP55058 493 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 GTF2BQ00403 316 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 MBTD1Q05BQ5 628 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 AGMOQ6ZNB7 445 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 USP37Q86T82 979 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CCDC105Q8IYK2 499 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 TSEN2Q8NCE0 465 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 PCDHB18PQ96TA0 734 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 IMPG2Q9BZV3 1241 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 NRDE2Q9H7Z3 1164 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 PRMT7Q9NVM4 692 aaPredicted RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 DMAC2Q9NW81 257 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CNOT8Q9UFF9 292 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 THAP12O43422 761 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 BMP1P13497 986 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 COMTP21964 271 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 TRPC3Q13507 836 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CAMK1Q14012 370 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CEP85LQ5SZL2 805 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 ZNF598Q86UK7 904 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CRIPAKQ8N1N5 446 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CEP120Q8N960 986 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 RFFLQ8WZ73 363 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 MAGOHBQ96A72 148 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 ACSF2Q96CM8 615 aaPredicted RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 PABPC5Q96DU9 382 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 MRRFQ96E11 262 aaKnown RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 BORCS6Q96GS4 357 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 C2orf40Q9H1Z8 148 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 ANAPC7Q9UJX3 599 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 HPCAL4Q9UM19 191 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 FAM50BQ9Y247 325 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 ATP8A1Q9Y2Q0 1164 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 HIDE1A8MVS5 230 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 HLA-DRAP01903 254 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 LINC00271P0C7V0 271 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 WNT7BP56706 349 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 TMEM173Q86WV6 379 aaPredicted RBP9.18□□□□□ -0.94
VPS4B-201ENST00000238497 SYCE1Q8N0S2 351 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 HASPINQ8TF76 798 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CASKIN2Q8WXE0 1202 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 CCDC114Q96M63 670 aa9.18□□□□□ -0.94
VPS4B-201ENST00000238497 GOLGA8SH3BPF8 625 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 TNFRSF10AO00220 468 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 SLC11A1P49279 550 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 TUBB4BP68371 445 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 GPC5P78333 572 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 MTM1Q13496 603 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 SLC39A4Q6P5W5 647 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 SLC27A1Q6PCB7 646 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 C1orf54Q8WWF1 131 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 SNTG2Q9NY99 539 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 ANKRD62A6NC57 917 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 GOLGA6L10A6NI86 522 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 LCA5LO95447 670 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 GALTP07902 379 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 PLCB3Q01970 1234 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 CYP24A1Q07973 514 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 DHX9Q08211 1270 aaKnown RBP9.17□□□□□ -0.94
VPS4B-201ENST00000238497 GLRA4Q5JXX5 417 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 UBXN11Q5T124 520 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 OR5B17Q8NGF7 314 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 ZNF564Q8TBZ8 553 aaPredicted RBP9.17□□□□□ -0.94
VPS4B-201ENST00000238497 ARL8AQ96BM9 186 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 HAUS1Q96CS2 278 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 CYFIP2Q96F07 1278 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 KANSL3Q9P2N6 904 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 CACNG4Q9UBN1 327 aa9.17□□□□□ -0.94
VPS4B-201ENST00000238497 SIP14410 1827 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 GOLGA6L10A0A0M3HER8 536 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ARL5CA6NH57 179 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 PI4K2BG5E9Z4 385 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SLC26A4O43511 780 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ZNF623O75123 536 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CFHP08603 1231 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CYP11B1P15538 503 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 AXLP30530 894 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 NAMPTP43490 491 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 NSFP46459 744 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 JAM2P57087 298 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ADCY1Q08828 1119 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 PPP1R7Q15435 360 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 EEF1DP3Q658K8 133 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CAPN12Q6ZSI9 719 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 NT5DC3Q86UY8 548 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 FAM76AQ8TAV0 307 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms