RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Gm43518A0A0G2JGB6 165 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vti1bO88384 232 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Odc1P00860 461 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 PolP11369 1281 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Chp1P61022 195 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pick1Q62083 416 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Usp50Q6P8X6 390 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ssxb5Q6XAS2 159 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pak5Q8C015 719 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Clptm1Q8VBZ3 664 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Oas1cQ924S2 362 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Hebp1Q9R257 190 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Slc22a3Q9WTW5 551 aa12.39□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cdc42bpbQ7TT50 1713 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Psmd14O35593 310 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Serpinh1P19324 417 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Tmprss11aQ3UQ41 389 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Idh3bQ91VA7 384 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dpp3Q99KK7 738 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Psma4Q9R1P0 261 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Sept5Q9Z2Q6 369 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cdhr2E9Q7P9 1308 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Msh2P43247 935 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 CyldQ80TQ2 952 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 4921511C20RikQ8BVT7 469 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zbtb8bQ8CII0 484 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rnf17Q99MV7 1640 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vmn2r23E9PXI5 849 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ticam2Q8BJQ4 232 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Scfd2Q8BTY8 684 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Anapc2Q8BZQ7 837 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 OscarQ8VBT3 265 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Mta3Q924K8 591 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Abcb11Q9QY30 1321 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Mindy4b-psA0A1W2P7H6 457 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Nmt1O70310 496 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Hspa9P38647 679 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Vps72Q62481 368 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cpne3Q8BT60 533 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ttc8Q8VD72 515 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Sike1Q9CPR7 207 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dot1lQ6XZL8 1540 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gm32742A0A1B0GT42 1604 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 1600015I10RikE9Q745 711 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Hk2O08528 917 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Crabp2P22935 138 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Fcho1Q8K285 873 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ube2sQ921J4 223 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Atp5f1Q9CQQ7 256 aaKnown RBP12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Kif28pD3YXS5 1028 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Susd4Q8BH32 490 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Slc47a1Q8K0H1 567 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Olfr1414Q8VGU5 312 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 GOLGA7BQ9D428 167 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Klhl18A0A0G2JGN5 579 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gm17093F6XGJ4 214 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Trpc5osQ3UHV4 110 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Prpf39Q8K2Z2 665 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Fam49bQ921M7 324 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Alg1Q921Q3 482 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Mcrs1Q99L90 462 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ppp2r3cQ9JK24 453 aa12.38□□□□□ -0.43
Trim56-201ENSMUST00000054384 RgmbQ7TQ33 436 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Srp68Q8BMA6 625 aaKnown RBP12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Usp38Q8BW70 1042 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 4932414N04RikQ8CEQ9 752 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Nxnl1Q8VC33 217 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Chst15Q91XQ5 561 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Sgpp1Q9JI99 430 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Slfn1Q9Z0I7 337 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Sbno2Q7TNB8 1349 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dennd5bA2RSQ0 1274 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rexo5D3YW29 759 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Hspa1bP17879 642 aaKnown RBP12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Sdr16c6Q05A13 316 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ankmy2Q3TPE9 440 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rrm2bQ6PEE3 351 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Fis1Q9CQ92 152 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Coro7Q9D2V7 922 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 4921501E09RikA0A0R4J054 908 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ifi213D3Z5G0 586 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 CratP47934 626 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 9930111J21Rik1Q5SVP0 844 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cyp4x1Q6A152 507 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Eme1Q8BJW7 570 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 UstQ8BUB6 407 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Dhx32Q8BZS9 744 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Olfr395Q8VGR3 312 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Cyp2j6O54750 501 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ifi44Q8BV66 422 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Akap12Q9WTQ5 1684 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 BtkP35991 659 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Zbtb39Q6PDK0 712 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Pcdha10Q91Y20 946 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Ttc30bQ9CY00 664 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Rbm6S4R1W5 1118 aaKnown RBP12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 RereQ80TZ9 1558 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Serpina16D3Z660 418 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 FancfE9Q5Z5 343 aa12.37□□□□□ -0.43
Trim56-201ENSMUST00000054384 Gm8257E9Q8R3 264 aa12.37□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 91 ms