RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ARHGAP15Q53QZ3 475 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 TXNDC8Q6A555 127 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 UNC13DQ70J99 1090 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 SCN4BQ8IWT1 228 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 CEP57L1Q8IYX8 460 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 LRRC52Q8N7C0 313 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 MAB21L3Q8N8X9 362 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 SPPL2BQ8TCT7 592 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 CSGALNACT1Q8TDX6 532 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 FAM3CQ92520 227 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 PAGE5Q96GU1 130 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 GCNAQ96QF7 691 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 MMS19Q96T76 1030 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 GPR88Q9GZN0 384 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 LMAN1LQ9HAT1 526 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 IL21Q9HBE4 155 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 ZDHHC9Q9Y397 364 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 EIF3DO15371 548 aaKnown RBP eCLIP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 CLSTN1O94985 981 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 FGF19O95750 216 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 HMGA1P17096 107 aaKnown RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 CASP4P49662 377 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 NLRP12P59046 1061 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 MYL7Q01449 175 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 CYP24A1Q07973 514 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 INTS6LQ5JSJ4 861 aaKnown RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 CNNM4Q6P4Q7 775 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 HS2ST1Q7LGA3 356 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TRAPPC11Q7Z392 1133 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TMEM150AQ86TG1 271 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 SPATA2LQ8IUW3 424 aaPredicted RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TMEM86AQ8N2M4 240 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 C2orf15Q8WU43 125 aaKnown RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 DEPDC1BQ8WUY9 529 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF516Q92618 1163 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 DNASE1L2Q92874 299 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 FNBP1Q96RU3 617 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 NELL2Q99435 816 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 ACBD6Q9BR61 282 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TASP1Q9H6P5 420 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TRPC7Q9HCX4 862 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 RBM12Q9NTZ6 932 aaKnown RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 GDAP2Q9NXN4 497 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 GTSE1Q9NYZ3 720 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 HSFX1Q9UBD0 423 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 CCL26Q9Y258 94 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 MRPS17Q9Y2R5 130 aaKnown RBP11.04□□□□□ -0.64
SCN1A-222ENST00000642141 TSC2P49815 1807 aa11.04□□□□□ -0.64
SCN1A-222ENST00000642141 ARNTLO00327 626 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 MAN2B1O00754 1011 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 KIAA0391O15091 583 aaKnown RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CHADO15335 359 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 NCAM2O15394 837 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 ACTN4O43707 911 aaKnown RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 SLFN14P0C7P3 912 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 PFKFB1P16118 471 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CDC25CP30307 473 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CYP27A1Q02318 531 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 EHHADHQ08426 723 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 STK4Q13043 487 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 SURF1Q15526 300 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 NFE2Q16621 373 aaPredicted RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 KNOP1Q1ED39 458 aaKnown RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 KMT5BQ4FZB7 885 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 ATL3Q6DD88 541 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 TXNDC11Q6PKC3 985 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 WDR49Q8IV35 697 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF687Q8N1G0 1237 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 TOP6BLQ8N6T0 577 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 XXYLT1Q8NBI6 393 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 LEO1Q8WVC0 666 aaPredicted RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 KBTBD7Q8WVZ9 684 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 E2F7Q96AV8 911 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CLDN23Q96B33 292 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 SPATA32Q96LK8 384 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CYP2S1Q96SQ9 504 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 PKMYT1Q99640 499 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 HINFPQ9BQA5 517 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 MRPL45Q9BRJ2 306 aaKnown RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 OSBPL6Q9BZF3 934 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 MAGEF1Q9HAY2 307 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 KIAA1586Q9HCI6 787 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 CRTAC1Q9NQ79 661 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 GKN1Q9NS71 199 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 NXF1Q9UBU9 619 aaKnown RBP11.03□□□□□ -0.64
SCN1A-222ENST00000642141 TCHHQ07283 1943 aa11.03□□□□□ -0.64
SCN1A-222ENST00000642141 PVALEFA0A1B0GWK0 134 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 GABRDO14764 452 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 KLRC4O43908 158 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 EXOC3O60645 756 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 PHACTR2O75167 634 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 LMNAP02545 664 aaKnown RBP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 F11P03951 625 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 PDIA4P13667 645 aaKnown RBP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 BDNFP23560 247 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 PCSK1P29120 753 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 GNL1P36915 607 aaPredicted RBP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 LHX1P48742 406 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 MYL6P60660 151 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 FCHO2Q0JRZ9 810 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms