RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TGIF2Q9GZN2 237 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OLFML3Q9NRN5 406 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TXLNGQ9NUQ3 528 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRNAU1APQ9NX07 287 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PCDH10Q9P2E7 1040 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 STX18Q9P2W9 335 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RPH3ALQ9UNE2 315 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CAMK2AQ9UQM7 478 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ALPK2Q86TB3 2170 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PIK3CDO00329 1044 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ATP9BO43861 1147 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PGLSO95336 258 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CLPTM1O96005 669 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SNRPA1P09661 255 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ACSL1P33121 698 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KCNH2Q12809 1159 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 AASDHQ4L235 1098 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TRPV3Q8NET8 790 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TEX47Q8TBZ9 253 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PIGKQ92643 395 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 VPS35Q96QK1 796 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CDADC1Q9BWV3 514 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC86Q9H6F5 360 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 HMX1Q9NP08 348 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MED12LQ86YW9 2145 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MOXD2PA6NHM9 499 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PGRMC1O00264 195 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CHL1O00533 1208 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RGS20O76081 388 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC166P0CW27 439 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SRGAP2CP0DJJ0 459 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 S100A7P31151 101 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MEI1Q5TIA1 1274 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FRA10AC1Q70Z53 315 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 METTL23Q86XA0 190 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF248Q8NDW4 579 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FAM71BQ8TC56 605 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 THAP3Q8WTV1 239 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CYB5R1Q9UHQ9 305 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TRPC5OSA6NMA1 111 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SNAP23O00161 211 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PITPNM1O00562 1244 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZBTB11O95625 1053 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 UMPSP11172 480 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CDC25BP30305 580 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ALDH1B1P30837 517 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KYNUQ16719 465 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CFAP221Q4G0U5 840 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SEL1L2Q5TEA6 688 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FBXO46Q6PJ61 603 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MICU3Q86XE3 530 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NARS2Q96I59 477 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SEPSECSQ9HD40 501 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 COG5Q9UP83 839 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PHF24Q9UPV7 400 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 AKT3Q9Y243 479 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NAALAD2Q9Y3Q0 740 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KIF7Q2M1P5 1343 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 AREL1O15033 823 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BUB1O43683 1085 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PPP1R37O75864 691 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KCNK5O95279 499 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SEC24BO95487 1268 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 APOA1P02647 267 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NTRK1P04629 796 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GSTT2P0CG29 244 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GSTT2BP0CG30 244 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NR2C1P13056 603 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GSK3AP49840 483 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RNF144AP50876 292 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 STXBP2Q15833 593 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RRAGBQ5VZM2 374 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SPATC1Q76KD6 591 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FASTKD5Q7L8L6 764 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CREG2Q8IUH2 290 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KIF2BQ8N4N8 673 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ABTB2Q8N961 1025 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ANKRD53Q8N9V6 530 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PHB2Q99623 299 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NUDT12Q9BQG2 462 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FRMD8Q9BZ67 464 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 EXOC6BQ9Y2D4 811 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SNX9Q9Y5X1 595 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZHX2Q9Y6X8 837 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 H0YAE9 185 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 HSF2BPO75031 334 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ARHGEF15O94989 841 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 HLA-DPA1P20036 260 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 OGNP20774 298 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PSMA5P28066 241 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CLK2P49760 499 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NAA35Q5VZE5 725 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LHFPL2Q6ZUX7 228 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GALNT5Q7Z7M9 940 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SESTD1Q86VW0 696 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 VCPIP1Q96JH7 1222 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ADPGKQ9BRR6 497 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PELOQ9BRX2 385 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC1Q9BTT6 524 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NUP58Q9BVL2 599 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms