RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 HMGA1P17096 107 aaKnown RBP20.93■□□□□ 0.94
CLN3-262ENST00000637699 GPR15P49685 360 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 TXNDC8Q6A555 127 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 CC2D1AQ6P1N0 951 aaPredicted RBP20.93■□□□□ 0.94
CLN3-262ENST00000637699 DCP1BQ8IZD4 617 aaKnown RBP20.93■□□□□ 0.94
CLN3-262ENST00000637699 RASSF8Q8NHQ8 419 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 FIZ1Q96SL8 496 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 TMLHEQ9NVH6 421 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 AGO2Q9UKV8 859 aaKnown RBP20.93■□□□□ 0.94
CLN3-262ENST00000637699 PCDHB5Q9Y5E4 795 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 ZFHX4Q86UP3 3567 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 ZNF638Q14966 1978 aaKnown RBP20.92■□□□□ 0.94
CLN3-262ENST00000637699 KPNA7A9QM74 516 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 TM4SF5O14894 197 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 SLC26A4O43511 780 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 PLCG1P19174 1290 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 GALK1P51570 392 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 KARSQ15046 597 aaKnown RBP20.92■□□□□ 0.94
CLN3-262ENST00000637699 STPG1Q5TH74 334 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 SDHAF4Q5VUM1 108 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 SLFN12LQ6IEE8 588 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 TTC16Q8NEE8 873 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 RIN3Q8TB24 985 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 MRPS31Q92665 395 aaKnown RBP20.92■□□□□ 0.94
CLN3-262ENST00000637699 RAD54LQ92698 747 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 PI4K2AQ9BTU6 479 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 IKZF4Q9H2S9 585 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 ANGPTL2Q9UKU9 493 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 LAMA1P25391 3075 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 TCHHQ07283 1943 aa20.92■□□□□ 0.94
CLN3-262ENST00000637699 PRPF40AO75400 957 aaKnown RBP20.91■□□□□ 0.94
CLN3-262ENST00000637699 DDX6P26196 483 aaKnown RBP eCLIP20.91■□□□□ 0.94
CLN3-262ENST00000637699 ABCD1P33897 745 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 AMPD2Q01433 879 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 SV2CQ496J9 727 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 NAIF1Q69YI7 327 aaPredicted RBP20.91■□□□□ 0.94
CLN3-262ENST00000637699 EFCAB13Q8IY85 973 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 HHIPQ96QV1 700 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 CCSER1Q9C0I3 900 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 KIF9Q9HAQ2 790 aa20.91■□□□□ 0.94
CLN3-262ENST00000637699 DENND4CQ5VZ89 1909 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 DRD1P21728 446 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 MPLP40238 635 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 TSPY1Q01534 308 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 GRIN1Q05586 938 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 PLA2G2CQ5R387 149 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 CRELD2Q6UXH1 353 aaPredicted RBP20.9■□□□□ 0.94
CLN3-262ENST00000637699 MON1AQ86VX9 555 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 CAMKK1Q8N5S9 505 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 ZC3H10Q96K80 434 aaKnown RBP20.9■□□□□ 0.94
CLN3-262ENST00000637699 P2RY13Q9BPV8 354 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 STYXL1Q9Y6J8 313 aa20.9■□□□□ 0.94
CLN3-262ENST00000637699 AKAP3O75969 853 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 CSH1P0DML2 217 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 CSH2P0DML3 217 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 GJB2P29033 226 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 PMLP29590 882 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 GJA4P35212 333 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 PDGFRLQ15198 375 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 DDR2Q16832 855 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 PLK5Q496M5 336 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 RPLP0P6Q8NHW5 317 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 POMGNT1Q8WZA1 660 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 TRPC7Q9HCX4 862 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 PCDHGA5Q9Y5G8 931 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 CHD6Q8TD26 2715 aa20.89■□□□□ 0.93
CLN3-262ENST00000637699 CYP2F1P24903 491 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 NFE2Q16621 373 aaPredicted RBP20.88■□□□□ 0.93
CLN3-262ENST00000637699 TCEAL6Q6IPX3 200 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 PDCL2Q8N4E4 241 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 CPA6Q8N4T0 437 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 LARP4BQ92615 738 aaKnown RBP20.88■□□□□ 0.93
CLN3-262ENST00000637699 TCEAL3Q969E4 200 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 ZNF560Q96MR9 790 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 CYP2S1Q96SQ9 504 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 VPS45Q9NRW7 570 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 EML5Q05BV3 1969 aa20.88■□□□□ 0.93
CLN3-262ENST00000637699 SOBPA7XYQ1 873 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 DCLK1O15075 740 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 IL18RAPO95256 599 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 ACAT1P24752 427 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 ADSSP30520 456 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 POLR2BP30876 1174 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 TFAMQ00059 246 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 PSMD2Q13200 908 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 ZNF268Q14587 947 aaPredicted RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 MTF1Q14872 753 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 FBXO43Q4G163 708 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 RNF43Q68DV7 783 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 DYMQ7RTS9 669 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 KRI1Q8N9T8 703 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 EXOC4Q96A65 974 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 DUSP15Q9H1R2 295 aaPredicted RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 ST6GALNAC4Q9H4F1 302 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 ECT2Q9H8V3 914 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 DUS2Q9NX74 493 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 DDX43Q9NXZ2 648 aaKnown RBP20.87■□□□□ 0.93
CLN3-262ENST00000637699 AGAP1Q9UPQ3 857 aa20.87■□□□□ 0.93
CLN3-262ENST00000637699 OBSL1O75147 1896 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 CEP295Q9C0D2 2601 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms