RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 TRMT2BQ96GJ1 504 aaKnown RBP17.72■□□□□ 0.43
CLN3-255ENST00000637100 TDP1Q9NUW8 608 aa17.72■□□□□ 0.43
CLN3-255ENST00000637100 PCDHB5Q9Y5E4 795 aa17.72■□□□□ 0.43
CLN3-255ENST00000637100 GREB1Q4ZG55 1949 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 TADA3O75528 432 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 CSH1P0DML2 217 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 CSH2P0DML3 217 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 PNPLA4P41247 253 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 WNT7BP56706 349 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 DHX8Q14562 1220 aaKnown RBP17.71■□□□□ 0.43
CLN3-255ENST00000637100 NFE2Q16621 373 aaPredicted RBP17.71■□□□□ 0.43
CLN3-255ENST00000637100 SV2CQ496J9 727 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 LIMS2Q7Z4I7 341 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 BRAPQ7Z569 592 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 GCNAQ96QF7 691 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 ACBD6Q9BR61 282 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 SMG9Q9H0W8 520 aaKnown RBP17.71■□□□□ 0.43
CLN3-255ENST00000637100 IKZF4Q9H2S9 585 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 FBRSL1Q9HCM7 1045 aaKnown RBP17.71■□□□□ 0.43
CLN3-255ENST00000637100 GDAP2Q9NXN4 497 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 SEL1LQ9UBV2 794 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 PCDHGA5Q9Y5G8 931 aa17.71■□□□□ 0.43
CLN3-255ENST00000637100 H3BQV1 296 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 TBCAO75347 108 aaKnown RBP17.7■□□□□ 0.42
CLN3-255ENST00000637100 NOL4O94818 638 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 TCF3P15923 654 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 DRD1P21728 446 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 AVPR1AP37288 418 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 GRSF1Q12849 480 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLN3-255ENST00000637100 CACNA2D4Q7Z3S7 1137 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 LRRC52Q8N7C0 313 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 MAB21L3Q8N8X9 362 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 DNAJC19Q96DA6 116 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 USP24Q9UPU5 2620 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 MAP1BP46821 2468 aaKnown RBP17.7■□□□□ 0.42
CLN3-255ENST00000637100 CFAP47Q6ZTR5 3102 aa17.7■□□□□ 0.42
CLN3-255ENST00000637100 CNOT1A5YKK6 2376 aaKnown RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 OBSL1O75147 1896 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 RALGAPA1Q6GYQ0 2036 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 GABRDO14764 452 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 RPP40O75818 363 aaKnown RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 KRT18P05783 430 aaKnown RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 AMPD2Q01433 879 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 PDGFRLQ15198 375 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 SF3A1Q15459 793 aaKnown RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 CFAP221Q4G0U5 840 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 FBXO43Q4G163 708 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 TXNDC8Q6A555 127 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 USP49Q70CQ1 688 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 CEP68Q76N32 757 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 BRSK2Q8IWQ3 736 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 PDCL2Q8N4E4 241 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 C1orf127Q8N9H9 656 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 EZH1Q92800 747 aaPredicted RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 ZNF560Q96MR9 790 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 EBF3Q9H4W6 596 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 TMEM206Q9H813 350 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 OLFML3Q9NRN5 406 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 ABI2Q9NYB9 513 aaPredicted RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 STK17AQ9UEE5 414 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 L1RE1Q9UN81 338 aa17.69■□□□□ 0.42
CLN3-255ENST00000637100 MORC2Q9Y6X9 1032 aaPredicted RBP17.69■□□□□ 0.42
CLN3-255ENST00000637100 PMLP29590 882 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 GJA4P35212 333 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 GALK1P51570 392 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 RPL10AP62906 217 aaKnown RBP17.68■□□□□ 0.42
CLN3-255ENST00000637100 SHC2P98077 582 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 FAM160A1Q05DH4 1040 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 KCNA1Q09470 495 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 ZNF77Q15935 545 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 TAF12Q16514 161 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 LARP1BQ659C4 914 aaKnown RBP17.68■□□□□ 0.42
CLN3-255ENST00000637100 TRIM68Q6AZZ1 485 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 KBTBD6Q86V97 674 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 SFR1Q86XK3 245 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 TMEM86AQ8N2M4 240 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 KRI1Q8N9T8 703 aaKnown RBP17.68■□□□□ 0.42
CLN3-255ENST00000637100 POMGNT1Q8WZA1 660 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 MRPS31Q92665 395 aaKnown RBP17.68■□□□□ 0.42
CLN3-255ENST00000637100 ARRDC1-AS1Q9H2J1 176 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 RXFP3Q9NSD7 469 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 GCNT4Q9P109 453 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 UXTQ9UBK9 157 aaPredicted RBP17.68■□□□□ 0.42
CLN3-255ENST00000637100 EBF1Q9UH73 591 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 SPAG17Q6Q759 2223 aa17.68■□□□□ 0.42
CLN3-255ENST00000637100 FRMD3A2A2Y4 597 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 LDHAP00338 332 aaKnown RBP17.67■□□□□ 0.42
CLN3-255ENST00000637100 EGFP01133 1207 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 ARSAP15289 507 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 GAP43P17677 238 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 GARTP22102 1010 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 GPR15P49685 360 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 TSPY1Q01534 308 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 BFSP1Q12934 665 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 USP4Q13107 963 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 SF3A2Q15428 464 aaKnown RBP17.67■□□□□ 0.42
CLN3-255ENST00000637100 INTS6LQ5JSJ4 861 aaKnown RBP17.67■□□□□ 0.42
CLN3-255ENST00000637100 L1TD1Q5T7N2 865 aaKnown RBP17.67■□□□□ 0.42
CLN3-255ENST00000637100 SCARA3Q6AZY7 606 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 FAM171BQ6P995 826 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms