RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ZMAT5Q9UDW3 170 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ERVK-11Q9UQG0 969 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 NEU2Q9Y3R4 380 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ACTL7BQ9Y614 415 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ROBO3Q96MS0 1386 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TNKSO95271 1327 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TESPA1A2RU30 521 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ZBED4O75132 1171 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 FAM58BPP0C7Q3 252 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SRGAP2CP0DJJ0 459 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SRGAP2BP0DMP2 458 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MCM7P33993 719 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 FDFT1P37268 417 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 CDK9P50750 372 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 WDR4P57081 412 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ESRRGP62508 458 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 BASP1P80723 227 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MRPS9P82933 396 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TUBA3CQ13748 450 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 PDK4Q16654 411 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 C15orf59Q2T9L4 293 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 DCAF6Q58WW2 860 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SIGIRRQ6IA17 410 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TWF2Q6IBS0 349 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ALKBH5Q6P6C2 394 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TTC23LQ6PF05 361 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 GABPB2Q8TAK5 448 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 PYDC1Q8WXC3 89 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 CELF1Q92879 486 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 HPS1Q92902 700 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MED30Q96HR3 178 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 FAM84BQ96KN1 310 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 CNBD2Q96M20 576 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 CTRCQ99895 268 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 DCUN1D5Q9BTE7 237 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ZBED2Q9BTP6 218 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 RTFDC1Q9BY42 306 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 VPS51Q9UID3 782 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ANKRD31Q8N7Z5 1873 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ADGRA3Q8IWK6 1321 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SYCE1LA8MT33 242 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 BTNL10A8MVZ5 291 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SIN3BO75182 1162 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 RARBP10826 455 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 PEX2P28328 305 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 HOXD10P28358 340 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 IFNA8P32881 189 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 RCVRNP35243 200 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 NR1H3Q13133 447 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MAPK6Q16659 721 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 OTOAQ7RTW8 1153 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ITIH5Q86UX2 942 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 AHI1Q8N157 1196 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 PTCD3Q96EY7 689 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 COQ7Q99807 217 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TSG101Q99816 390 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 RPAP3Q9H6T3 665 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MARCH7Q9H992 704 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 S100A14Q9HCY8 104 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 GRHL1Q9NZI5 618 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 KLHL3Q9UH77 587 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 NAALADL1Q9UQQ1 740 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 RTCBQ9Y3I0 505 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 POTECB2RU33 542 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 KLRF2D3W0D1 207 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 KPNA4O00629 521 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 AQP9O43315 295 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 PRDM1O75626 825 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 FYNP06241 537 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 RASA2Q15283 850 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 UBAP2Q5T6F2 1119 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 CNNM4Q6P4Q7 775 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 SMIM5Q71RC9 77 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 ULK2Q8IYT8 1036 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 CAPSLQ8WWF8 208 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 PLIN2Q99541 437 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 OLFM1Q99784 485 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 MKNK1Q9BUB5 465 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 PPP1R1BQ9UD71 204 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 SRP68Q9UHB9 627 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 SMG5Q9UPR3 1016 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 PTPN22Q9Y2R2 807 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 MTO1Q9Y2Z2 717 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 NR2E1Q9Y466 385 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 BUD23O43709 281 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 TM7SF2O76062 418 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 ENO1P06733 434 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 JAK1P23458 1154 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 KRT6CP48668 564 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 YWHAGP61981 247 aaKnown RBP eCLIP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 HIC1Q14526 733 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 WTAPQ15007 396 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 OASLQ15646 514 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 RFPL4BQ6ZWI9 263 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 TMC7Q7Z402 723 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 MMAAQ8IVH4 418 aaKnown RBP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 MARVELD2Q8N4S9 558 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.15□□□□□ -1.26
SCN1A-213ENST00000636759 POU5F2Q8N7G0 328 aa7.15□□□□□ -1.26
SCN1A-213ENST00000636759 LRRC57Q8N9N7 239 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms