RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 MMS22LQ6ZRQ5 1243 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 RSRC2Q7L4I2 434 aaKnown RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 ERICH1Q86X53 443 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CREG2Q8IUH2 290 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 PDCL2Q8N4E4 241 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 C1orf131Q8NDD1 294 aaKnown RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 ACTRT1Q8TDG2 376 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 LINC01599Q8WXQ3 324 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CPA5Q8WXQ8 436 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 UBXN4Q92575 508 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CD101Q93033 1021 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 MRPL9Q9BYD2 267 aaKnown RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 CXCL16Q9H2A7 254 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 HIPK3Q9H422 1215 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 HESX1Q9UBX0 185 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 ANAPC7Q9UJX3 599 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 L1RE1Q9UN81 338 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 TET1Q8NFU7 2136 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 A8MXQ7 604 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 M0QZQ0 153 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 MYO1FO00160 1098 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 PGRMC1O00264 195 aaKnown RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 SPTLC1O15269 473 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 PSTPIP1O43586 416 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 NBNO60934 754 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 TYMPP19971 482 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 GPD2P43304 727 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 SLC8A3P57103 927 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 BST2Q10589 180 aaKnown RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 MAMLD1Q13495 774 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 ZNF268Q14587 947 aaPredicted RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 ACAP1Q15027 740 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 PPP2R5EQ16537 467 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 PTPN20Q4JDL3 420 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 NOMO2Q5JPE7 1267 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 LRRC38Q5VT99 294 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 CCDC70Q6NSX1 233 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 PASD1Q8IV76 773 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 RASGEF1CQ8N431 466 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 GPR161Q8N6U8 529 aaKnown RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 B3GALNT2Q8NCR0 500 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 OR6B3Q8NGW1 331 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 LPPQ93052 612 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 SENP8Q96LD8 212 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 HEXIM2Q96MH2 286 aaKnown RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 NCAPGQ9BPX3 1015 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 MRPL45Q9BRJ2 306 aaKnown RBP11.19□□□□□ -0.62
CLN3-248ENST00000636355 GOLGA2P5Q9HBQ8 144 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 IP6K2Q9UHH9 426 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 TSPAN16Q9UKR8 245 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 TBX21Q9UL17 535 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLN3-248ENST00000636355 NLRC5Q86WI3 1866 aa11.19□□□□□ -0.62
CLN3-248ENST00000636355 COL4A4P53420 1690 aaPredicted RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 MEIS3P2A8K0S8 358 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 CYB561D2O14569 222 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 ATMINO43313 823 aaPredicted RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 SPOPO43791 374 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 PQBP1O60828 265 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 EFCAB14O75071 495 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 PROSCO94903 275 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 TFRCP02786 760 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 PFKMP08237 780 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 DESP17661 470 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 MCM3P25205 808 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 GNL1P36915 607 aaPredicted RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 ACADSBP45954 432 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 RPL34P49207 117 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 PIGHQ14442 188 aaPredicted RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 MAPRE1Q15691 268 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 GOLGA7BQ2TAP0 167 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 PPP1R15BQ5SWA1 713 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 DENND1BQ6P3S1 775 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 DCLRE1AQ6PJP8 1040 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 ARCQ7LC44 396 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 NPAS4Q8IUM7 802 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 ANKRD52Q8NB46 1076 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 C18orf8Q96DM3 657 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 SUSD3Q96L08 255 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 HNRNPABQ99729 332 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 OSBPL7Q9BZF2 842 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 CDH9Q9ULB4 789 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 ALG6Q9Y672 507 aa11.18□□□□□ -0.62
CLN3-248ENST00000636355 KIAA0100Q14667 2235 aaKnown RBP11.18□□□□□ -0.62
CLN3-248ENST00000636355 TARSL2A2RTX5 802 aaKnown RBP11.17□□□□□ -0.62
CLN3-248ENST00000636355 TMEM191CA6NGB0 347 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 SIGLEC16A6NMB1 481 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 CCDC188H7C350 402 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 KCNK3O14649 394 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 DDX3YO15523 660 aaKnown RBP11.17□□□□□ -0.62
CLN3-248ENST00000636355 TRAPPC3O43617 180 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 CFHP08603 1231 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 PLA2G4AP47712 749 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 CLCNKBP51801 687 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 PLCB3Q01970 1234 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 FAAP100Q0VG06 881 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 GLE1Q53GS7 698 aaKnown RBP11.17□□□□□ -0.62
CLN3-248ENST00000636355 CLLU1OSQ5K130 101 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 CNKSR3Q6P9H4 555 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms