RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZFPM1Q8IX07 1006 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 THNSL1Q8IYQ7 743 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 DCLK2Q8N568 766 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 SLC24A2Q9UI40 661 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 ZHX2Q9Y6X8 837 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 CASZ1Q86V15 1759 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 XPO1O14980 1071 aaKnown RBP11.55□□□□□ -0.56
CLN3-244ENST00000636147 WFS1O76024 890 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 SLC25A3Q00325 362 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 MORF4L2Q15014 288 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 MAPK6Q16659 721 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 HYIQ5T013 277 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 RIPOR1Q6ZS17 1223 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 GALNT15Q8N3T1 639 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 TTC13Q8NBP0 860 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 NMUR2Q9GZQ4 415 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 KCNH7Q9NS40 1196 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 KCNN4O15554 427 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 PRPSAP2O60256 369 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 CALB1P05937 261 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 SNRPAP09012 282 aaKnown RBP11.55□□□□□ -0.56
CLN3-244ENST00000636147 KRT3P12035 628 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 GTF2H1P32780 548 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 ELK3P41970 407 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 ECE1P42892 770 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 RAPH1Q70E73 1250 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 APLFQ8IW19 511 aaPredicted RBP11.55□□□□□ -0.56
CLN3-244ENST00000636147 FAM71AQ8IYT1 594 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 SEC14L1Q92503 715 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 GCNAQ96QF7 691 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 MECRQ9BV79 373 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 COA1Q9GZY4 146 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 CHCHD3Q9NX63 227 aaKnown RBP11.55□□□□□ -0.56
CLN3-244ENST00000636147 BCAP29Q9UHQ4 241 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 AGO2Q9UKV8 859 aaKnown RBP11.55□□□□□ -0.56
CLN3-244ENST00000636147 BCL9O00512 1426 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 UBE4BO95155 1302 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 F8VP50 259 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 GRAP2O75791 330 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ASMTLO95671 621 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ADRB2P07550 413 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 FAM200BP0CF97 657 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 RFC1P35251 1148 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 ARL1P40616 181 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 TUBP50607 506 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ROR1Q01973 937 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SWSAP1Q6NVH7 229 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ENOSF1Q7L5Y1 443 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 RNF148Q8N7C7 305 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 CCNYQ8ND76 341 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 EXD1Q8NHP7 514 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SEMA4DQ92854 862 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ATP6V0A1Q93050 837 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ASCC2Q9H1I8 757 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 ENO3P13929 434 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 RAB27AP51159 221 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SESN2P58004 480 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 MGAT5Q09328 741 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 TRMT5Q32P41 509 aaKnown RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 CCDC14Q49A88 953 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 Q4G0T1 1027 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ZDHHC14Q8IZN3 488 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 EMC1Q8N766 993 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SH3TC2Q8TF17 1288 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 PPP2R3CQ969Q6 453 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 RMDN3Q96TC7 470 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 KLC2Q9H0B6 622 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 RAVER2Q9HCJ3 691 aaKnown RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 TAS2R1Q9NYW7 299 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ZNF212Q9UDV6 495 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 INPP5FQ9Y2H2 1132 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ACTL7BQ9Y614 415 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 ADGRA3Q8IWK6 1321 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 PSTPIP1O43586 416 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 RTN3O95197 1032 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 NPTXRO95502 500 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 CYP1A2P05177 515 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SRGAP2CP0DJJ0 459 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 AMPD1P23109 780 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 PRAMEP78395 509 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 KBTBD12Q3ZCT8 623 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 GALNTL6Q49A17 601 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 MOXD1Q6UVY6 613 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 SPOCD1Q6ZMY3 1216 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 USP6NLQ92738 828 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 NYAP2Q9P242 653 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 PPP1R1BQ9UD71 204 aaPredicted RBP11.54□□□□□ -0.56
CLN3-244ENST00000636147 POLLQ9UGP5 575 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 TBX20Q9UMR3 447 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 NWD2Q9ULI1 1742 aa11.54□□□□□ -0.56
CLN3-244ENST00000636147 TOPAZ1Q8N9V7 1692 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 DDTLA6NHG4 134 aaPredicted RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 CLPTM1O96005 669 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 KRT7P08729 469 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ANPEPP15144 967 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 TPD52P55327 224 aaPredicted RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 BCAR1P56945 870 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 RPL7AP62424 266 aaKnown RBP11.53□□□□□ -0.56
CLN3-244ENST00000636147 ORC1Q13415 861 aa11.53□□□□□ -0.56
CLN3-244ENST00000636147 ACER1Q8TDN7 264 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms