RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 KCNA2P16389 499 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 HOXA13P31271 388 aaPredicted RBP9.27□□□□□ -0.92
VCL-206ENST00000623461 HADHAP40939 763 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 DGUOKQ16854 277 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 C4orf50Q6ZRC1 276 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 ATG9AQ7Z3C6 839 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 FAM162AQ96A26 154 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 PAFAH2Q99487 392 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 RRN3Q9NYV6 651 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 NPHP3-ACAD11A0A0J9YXS1 232 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 PDZK1P1A8MUH7 402 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 TNPO2O14787 897 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 NPTXRO95502 500 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 PYGMP11217 842 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 STAT3P40763 770 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 PID1Q7Z2X4 250 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 KYQ8NBH2 561 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 C8orf37Q96NL8 207 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 REEP2Q9BRK0 252 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 ZBED2Q9BTP6 218 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 TRIM45Q9H8W5 580 aaPredicted RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 GZMAP12544 262 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 SESN2P58004 480 aaPredicted RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 IFI35P80217 286 aaPredicted RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 CSTF3Q12996 717 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 BLMHQ13867 455 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 TMEM179Q6ZVK1 233 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 HAUS6Q7Z4H7 955 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 ATP8B4Q8TF62 1192 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 BBS2Q9BXC9 721 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 DHX35Q9H5Z1 703 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 CIDEBQ9UHD4 219 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 OPLAHO14841 1288 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 SORBS3O60504 671 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 CYP2D6P10635 497 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 BAG6P46379 1132 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 KCNA1Q09470 495 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 DEFB107AQ8IZN7 70 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 CDC26Q8NHZ8 85 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 SEPT1Q8WYJ6 367 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 ZNF75CPQ92670 426 aaPredicted RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 IFT43Q96FT9 208 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 KLHL11Q9NVR0 708 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 KBTBD4Q9NVX7 518 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 EURLQ9NYK6 297 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 DNAJC16Q9Y2G8 782 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 LMTK3Q96Q04 1460 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 MYO1DO94832 1006 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 NMT1P30419 496 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 KCNJ2P63252 427 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 SLC26A11Q86WA9 606 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 FOXP4Q8IVH2 680 aaPredicted RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 FLCNQ8NFG4 579 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 CCDC126Q96EE4 140 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 MTMR8Q96EF0 704 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 ORAI2Q96SN7 254 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 TMEM245Q9H330 911 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 NRDE2Q9H7Z3 1164 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 KCNK4Q9NYG8 393 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 RSL24D1Q9UHA3 163 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 DMTF1Q9Y222 760 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 AFF2P51816 1311 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 PNMA8CA0A1B0GUJ8 204 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 PHGDHO43175 533 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 CDC25CP30307 473 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 TSPY1Q01534 308 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 CENPPQ6IPU0 288 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 RNF135Q8IUD6 432 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 THNSL1Q8IYQ7 743 aa9.27□□□□□ -0.93
VCL-206ENST00000623461 DGCR14Q96DF8 476 aaKnown RBP9.27□□□□□ -0.93
VCL-206ENST00000623461 H0YIN7 160 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 STX7O15400 261 aaKnown RBP9.26□□□□□ -0.93
VCL-206ENST00000623461 BGNP21810 368 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 SCNN1DP51172 638 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 RPS6KA3P51812 740 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 AAGABQ6PD74 315 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 SH3RF3Q8TEJ3 882 aaPredicted RBP9.26□□□□□ -0.93
VCL-206ENST00000623461 ECSITQ9BQ95 431 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 TMEM8AQ9HCN3 771 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 CNTNAP5Q8WYK1 1306 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 LRRC10BA6NIK2 292 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 DDX5P17844 614 aaKnown RBP9.26□□□□□ -0.93
VCL-206ENST00000623461 STILQ15468 1287 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 FBXO36Q8NEA4 188 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 OR6Y1Q8NGX8 325 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 RSPH1Q8WYR4 309 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 TBC1D10AQ9BXI6 508 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 PACSIN1Q9BY11 444 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 AGXT2Q9BYV1 514 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 SALL3Q9BXA9 1300 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 DEPDC5O75140 1603 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 EFCAB14O75071 495 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 VIL1P09327 827 aaKnown RBP9.26□□□□□ -0.93
VCL-206ENST00000623461 SERPINB5P36952 375 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 IL12RB1P42701 662 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 SNX17Q15036 470 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 PDK3Q15120 406 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 MROH9Q5TGP6 573 aa9.26□□□□□ -0.93
VCL-206ENST00000623461 RWDD4Q6NW29 188 aaKnown RBP9.26□□□□□ -0.93
VCL-206ENST00000623461 ADGRF4Q8IZF3 695 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms