RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 MKNK1Q9BUB5 465 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 GPR108Q9NPR9 543 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 ZMAT5Q9UDW3 170 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 LGALS13Q9UHV8 139 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 MRPL42Q9Y6G3 142 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 SBF2Q86WG5 1849 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 TMEM114B3SHH9 223 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 ITM2AO43736 263 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 TM7SF2O76062 418 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 MZF1P28698 734 aaPredicted RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 IFIT5Q13325 482 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 METTL24Q5JXM2 366 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 PPP1R2P3Q6NXS1 205 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 MFSD6Q6ZSS7 791 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 ZNF571Q7Z3V5 609 aaPredicted RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 RNF169Q8NCN4 708 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 RFWD2Q8NHY2 731 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 EFHD2Q96C19 240 aaPredicted RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 CLPTM1LQ96KA5 538 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 HAUS8Q9BT25 410 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 TRIM9Q9C026 710 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 FBXO6Q9NRD1 293 aaPredicted RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 TRMT112Q9UI30 125 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 ZBTB21Q9ULJ3 1066 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 SMG5Q9UPR3 1016 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 MTO1Q9Y2Z2 717 aaKnown RBP8.29□□□□□ -1.08
VPS11-209ENST00000622309 CEPT1Q9Y6K0 416 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 ADAMTS7Q9UKP4 1686 aa8.29□□□□□ -1.08
VPS11-209ENST00000622309 A0A0A6YYK5 440 aaPredicted RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 WDR91A4D1P6 747 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 KLRF2D3W0D1 207 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TEX28O15482 410 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ZBED4O75132 1171 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ENO1P06733 434 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 CIITAP33076 1130 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SLC5A3P53794 718 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 NPEPPSP55786 919 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 RASA2Q15283 850 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 DNAL1Q4LDG9 190 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 WDR45BQ5MNZ6 344 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 IL23RQ5VWK5 629 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 FBXL19Q6PCT2 694 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 FASTKD5Q7L8L6 764 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 TMC7Q7Z402 723 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 PROM2Q8N271 834 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 GALNT4Q8N4A0 578 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TRPC4APQ8TEL6 797 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ERLEC1Q96DZ1 483 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ASIC4Q96FT7 647 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CNBD2Q96M20 576 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CCDC138Q96M89 665 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TRABDQ9H4I3 376 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 GREM2Q9H772 168 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 PIH1D3Q9NQM4 214 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 CNNM1Q9NRU3 951 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 HOXC10Q9NYD6 342 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ASIC3Q9UHC3 531 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 PCYOX1Q9UHG3 505 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 DTNAQ9Y4J8 743 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 COL4A3BPQ9Y5P4 624 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ARFGEF2Q9Y6D5 1785 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 A0A1W2PQ67 120 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ANKRD34BA5PLL1 514 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 PIK3CDO00329 1044 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TBCAO75347 108 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 BBOX1O75936 387 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 FBXO21O94952 628 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ZBTB11O95625 1053 aaPredicted RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 TCEA1P23193 301 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 FDFT1P37268 417 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CDK9P50750 372 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 CTTNQ14247 550 aaKnown RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 NONOQ15233 471 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS11-209ENST00000622309 PLEKHG4Q58EX7 1191 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 DCAF6Q58WW2 860 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ITPRIPL1Q6GPH6 555 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SPOPLQ6IQ16 392 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 OSTM1Q86WC4 334 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 MARVELD2Q8N4S9 558 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CALML6Q8TD86 181 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SH3RF3Q8TEJ3 882 aaPredicted RBP8.28□□□□□ -1.08
VPS11-209ENST00000622309 THAP11Q96EK4 314 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ABCG4Q9H172 646 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 MAGEF1Q9HAY2 307 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ZNF287Q9HBT7 754 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SLC7A8Q9UHI5 535 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SNX9Q9Y5X1 595 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 ZMYM2Q9UBW7 1377 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SYNGAP1Q96PV0 1343 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 A0A0B4J203 849 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TTC34A8MYJ7 566 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 TCEA3O75764 348 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CAMTA2O94983 1202 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CHEK2O96017 543 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SRGAP2CP0DJJ0 459 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 SRGAP2BP0DMP2 458 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CDK16Q00536 496 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 STAT4Q14765 748 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 CNGA3Q16281 694 aa8.28□□□□□ -1.08
VPS11-209ENST00000622309 MAPK6Q16659 721 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms