RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 QRICH1Q2TAL8 776 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 TMEM63BQ5T3F8 832 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 DUPD1Q68J44 220 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 HHIPL2Q6UWX4 724 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MAMSTRQ6ZN01 415 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 CCDC81Q6ZN84 652 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PODNQ7Z5L7 613 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 ACMSDQ8TDX5 336 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 CALML4Q96GE6 196 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 KBTBD4Q9NVX7 518 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PCDHA1Q9Y5I3 950 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MAD1L1Q9Y6D9 718 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PNMA6FA0A0J9YX94 578 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 K7EPI3 171 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 PLSCR1O15162 318 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 RIPK2O43353 540 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 PHF2O75151 1096 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 GH2P01242 217 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 LMNB1P20700 586 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 POLR2FP61218 127 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 XIAPP98170 497 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 IL9RQ01113 521 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 POU5F1Q01860 360 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 GRB10Q13322 594 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 ANKRD40Q6AI12 368 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CLNKQ7Z7G1 428 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 ITIH5Q86UX2 942 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 LSMEM2Q8N112 164 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CENPSQ8N2Z9 138 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CSGALNACT2Q8N6G5 542 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 GIPC2Q8TF65 315 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 DDI1Q8WTU0 396 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 C10orf82Q8WW14 230 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 OTUD5Q96G74 571 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 TTC1Q99614 292 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 MRPL1Q9BYD6 325 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 CCSER1Q9C0I3 900 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 SNX25Q9H3E2 840 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 SLC38A7Q9NVC3 462 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 LZTS1Q9Y250 596 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 MYMKA6NI61 221 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 LRRC53A6NM62 1247 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 YDJCA8MPS7 323 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 MAGEB2O15479 319 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 AQP9O43315 295 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CHEK2O96017 543 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CDH2P19022 906 aaPredicted RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 HOXA13P31271 388 aaPredicted RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 MTIF2P46199 727 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 KPNA1P52294 538 aaPredicted RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 AP3M2P53677 418 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 SPCS2Q15005 226 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 TWF2Q6IBS0 349 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 RAPH1Q70E73 1250 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 RRAGAQ7L523 313 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 MIER3Q7Z3K6 550 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 LRRC6Q86X45 466 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 ZDHHC15Q96MV8 337 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 SERPINB12Q96P63 405 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 PNMA5Q96PV4 448 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 CYTH2Q99418 400 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 NOC4LQ9BVI4 516 aaKnown RBP10.71□□□□□ -0.69
VPS39-214ENST00000614932 SEZ6LQ9BYH1 1024 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 ZHX3Q9H4I2 956 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 RABGAP1Q9Y3P9 1069 aa10.71□□□□□ -0.69
VPS39-214ENST00000614932 PSMA7O14818 248 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 ZBTB5O15062 677 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 KRT75O95678 551 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 SNHG28P0DPA3 235 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 ECE1P42892 770 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 RAP1GDS1P52306 607 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 NUP107P57740 925 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 DLG1Q12959 904 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 KRT81Q14533 505 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 SFT2D3Q587I9 215 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 DCAF6Q58WW2 860 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 ADGRG6Q86SQ4 1221 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 SIAH1Q8IUQ4 282 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 CALML6Q8TD86 181 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 BORCS5Q969J3 196 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 PTCD3Q96EY7 689 aaKnown RBP10.71□□□□□ -0.7
VPS39-214ENST00000614932 NSL1Q96IY1 281 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 CSRNP1Q96S65 589 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 AS3MTQ9HBK9 375 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 ZNF277Q9NRM2 450 aaPredicted RBP10.71□□□□□ -0.7
VPS39-214ENST00000614932 BLOC1S4Q9NUP1 217 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 HERC5Q9UII4 1024 aaKnown RBP10.71□□□□□ -0.7
VPS39-214ENST00000614932 ERVK-11Q9UQG0 969 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 CEPT1Q9Y6K0 416 aa10.71□□□□□ -0.7
VPS39-214ENST00000614932 F5H6K3 240 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 H3BSA7 217 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 CLASP2O75122 1294 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 UBXN2AP68543 259 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 KCNC4Q03721 635 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 SF3B4Q15427 424 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS39-214ENST00000614932 TDRD12Q587J7 1177 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 UBAP2Q5T6F2 1119 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 C6orf163Q5TEZ5 329 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 STRIP1Q5VSL9 837 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 NET1Q7Z628 596 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms