RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 OXCT2Q9BYC2 517 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 KCNH6Q9H252 994 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF334Q9HCZ1 680 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 TMLHEQ9NVH6 421 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 INTS13Q9NVM9 706 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 CA14Q9ULX7 337 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 MAFFQ9ULX9 164 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 L1RE1Q9UN81 338 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 MRPS23Q9Y3D9 190 aaKnown RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 ZFP37Q9Y6Q3 630 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 CACNA1HO95180 2353 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF233A6NK53 670 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 KCNJ18B7U540 433 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 TULP1O00294 542 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 CALUO43852 315 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 EEF1GP26641 437 aaKnown RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 CYP2J2P51589 502 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 GPC5P78333 572 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 NHLH1Q02575 133 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 BFSP1Q12934 665 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 KCNJ12Q14500 433 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 EDRF1Q3B7T1 1238 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 SV2CQ496J9 727 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 SLC39A12Q504Y0 691 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 ZC3H3Q8IXZ2 948 aaKnown RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 SIX5Q8N196 739 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 RDH13Q8NBN7 331 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 SHKBP1Q8TBC3 707 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 ZSWIM3Q96MP5 696 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF560Q96MR9 790 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 PHOX2BQ99453 314 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 XPO4Q9C0E2 1151 aaKnown RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 SLC2A4RGQ9NR83 387 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 MAGEC2Q9UBF1 373 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-204ENST00000608957 ITGA11Q9UKX5 1188 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 CACNA1IQ9P0X4 2223 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 MYH10P35580 1976 aa12.38□□□□□ -0.43
LINC00539-204ENST00000608957 FANCMQ8IYD8 2048 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 PDXKO00764 312 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TPM3P06753 285 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TMEM191BP0C7N4 346 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 MYL4P12829 197 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 ATF6P18850 670 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 UBASH3AP57075 661 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 FKBP3Q00688 224 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 CYP24A1Q07973 514 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 KRT31Q15323 416 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TEAD2Q15562 447 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 SNRNP35Q16560 246 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TCP11X2Q5H9J9 407 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 ASTLQ6HA08 431 aaPredicted RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TANGO2Q6ICL3 276 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 PDZD4Q76G19 769 aaPredicted RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 APTXQ7Z2E3 356 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 LIMS2Q7Z4I7 341 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 IRF2BP1Q8IU81 584 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 C12orf56Q8IXR9 622 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 LRRC52Q8N7C0 313 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 FLCNQ8NFG4 579 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 CACTINQ8WUQ7 758 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF516Q92618 1163 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 ANKRD36BP1Q96IX9 119 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 CNOT6LQ96LI5 555 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF512Q96ME7 567 aaPredicted RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 CEP63Q96MT8 703 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 PKMYT1Q99640 499 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 LPIN3Q9BQK8 851 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 GDAP2Q9NXN4 497 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 GDE1Q9NZC3 331 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 WNT16Q9UBV4 365 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 LIMA1Q9UHB6 759 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 FBXL21Q9UKT6 434 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 DSEQ9UL01 958 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 TRAF3IP3Q9Y228 551 aa12.37□□□□□ -0.43
LINC00539-204ENST00000608957 HELZP42694 1942 aaKnown RBP12.37□□□□□ -0.43
LINC00539-204ENST00000608957 A0A1B0GTH6 734 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 MICAL2O94851 1124 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 CST3P01034 146 aaPredicted RBP12.36□□□□□ -0.43
LINC00539-204ENST00000608957 KRT19P08727 400 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 ACAT1P24752 427 aaKnown RBP12.36□□□□□ -0.43
LINC00539-204ENST00000608957 PNPLA4P41247 253 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 CASP4P49662 377 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 COPB1P53618 953 aaKnown RBP12.36□□□□□ -0.43
LINC00539-204ENST00000608957 RBP5P82980 135 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 PSMD6Q15008 389 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 NFIL3Q16649 462 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 SOWAHAQ2M3V2 549 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 FILIP1LQ4L180 1135 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 FAM78AQ5JUQ0 283 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 STXBP5Q5T5C0 1151 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 GAREM2Q75VX8 874 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 MTSS1LQ765P7 747 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 HS2ST1Q7LGA3 356 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 METTL23Q86XA0 190 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 WDR49Q8IV35 697 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 ELMOD1Q8N336 334 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 XXYLT1Q8NBI6 393 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 STKLD1Q8NE28 680 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 GOLGA5Q8TBA6 731 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 ASB16Q96NS5 453 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms