RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LRRTM3Q86VH5 581 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 MLKLQ8NB16 471 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 PSMG2Q969U7 264 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 MYADMQ96S97 322 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 PI4K2AQ9BTU6 479 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 XYLT2Q9H1B5 865 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 KCNK12Q9HB15 430 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 LMBRD1Q9NUN5 540 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 EHD2Q9NZN4 543 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 MUC3AQ02505 3323 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 DOCK8Q8NF50 2099 aa20.68■□□□□ 0.9
UPF1-212ENST00000601689 PPP1R3GB7ZBB8 358 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 N4BP1O75113 896 aaKnown RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 CCDC192P0DO97 292 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 ANXA13P27216 316 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 PMS1P54277 932 aaKnown RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 CYP27A1Q02318 531 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 TPD52L1Q16890 204 aaPredicted RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 CFAP221Q4G0U5 840 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 ARHGAP15Q53QZ3 475 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 LIMS2Q7Z4I7 341 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 DNAJB7Q7Z6W7 309 aaPredicted RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 OSTM1Q86WC4 334 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 ZC3H3Q8IXZ2 948 aaKnown RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 TTC39CQ8N584 583 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 FBXL13Q8NEE6 735 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 FEZF2Q8TBJ5 459 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 KBTBD7Q8WVZ9 684 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 FAXDC2Q96IV6 333 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 MRPL45Q9BRJ2 306 aaKnown RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 SLITRK6Q9H5Y7 841 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 CEP72Q9P209 647 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 UXTQ9UBK9 157 aaPredicted RBP20.67■□□□□ 0.9
UPF1-212ENST00000601689 ATP8B3O60423 1300 aa20.67■□□□□ 0.9
UPF1-212ENST00000601689 VNN1O95497 513 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 ASS1P00966 412 aaKnown RBP20.66■□□□□ 0.9
UPF1-212ENST00000601689 CSH1P0DML2 217 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 CSH2P0DML3 217 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 CD44P16070 742 aaKnown RBP20.66■□□□□ 0.9
UPF1-212ENST00000601689 LMO2P25791 158 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 PPP3CAQ08209 521 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 SIGLEC14Q08ET2 396 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 SCARA3Q6AZY7 606 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 FAM171BQ6P995 826 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 VSTM1Q6UX27 236 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 ITFG1Q8TB96 612 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 MYCBPAPQ8TBZ2 947 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 CRISPLD1Q9H336 500 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 CYP3A43Q9HB55 503 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 ZMYM5Q9UJ78 669 aa20.66■□□□□ 0.9
UPF1-212ENST00000601689 TRIM66O15016 1216 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 GPR37L1O60883 481 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 VNN2O95498 520 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 MBD3O95983 291 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 ASGR2P07307 311 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 PTPN1P18031 435 aaKnown RBP20.65■□□□□ 0.9
UPF1-212ENST00000601689 CDC25CP30307 473 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 EPHA5P54756 1037 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 STX17P56962 302 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 PSMC1P62191 440 aaKnown RBP20.65■□□□□ 0.9
UPF1-212ENST00000601689 NOP14P78316 857 aaKnown RBP20.65■□□□□ 0.9
UPF1-212ENST00000601689 TTI2Q6NXR4 508 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 SCARA5Q6ZMJ2 495 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 UNC93AQ86WB7 457 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 SCN4BQ8IWT1 228 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 ING5Q8WYH8 240 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 KHSRPQ92945 711 aaKnown RBP eCLIP20.65■□□□□ 0.9
UPF1-212ENST00000601689 MCRS1Q96EZ8 462 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 CEP295NLQ96MC4 621 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 RAB20Q9NX57 234 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 RWDD2AQ9UIY3 292 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 BDP1A6H8Y1 2624 aa20.65■□□□□ 0.9
UPF1-212ENST00000601689 MYBPHLA2RUH7 354 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 BMP6P22004 513 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 GRIK1P39086 918 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 MAGEA11P43364 429 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 PRSS36Q5K4E3 855 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 C1orf220Q5T0J3 134 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 TRIM67Q6ZTA4 783 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 NPAS3Q8IXF0 933 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 HS6ST3Q8IZP7 471 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 TTC9BQ8N6N2 239 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 B3GALNT2Q8NCR0 500 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 TAS1R2Q8TE23 839 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 GIPC2Q8TF65 315 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 MYLPFQ96A32 169 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 SRRTQ9BXP5 876 aaKnown RBP20.64■□□□□ 0.89
UPF1-212ENST00000601689 ELOVL4Q9GZR5 314 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 NIF3L1Q9GZT8 377 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 ATXN3LQ9H3M9 355 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 SMYD3Q9H7B4 428 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 TMLHEQ9NVH6 421 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 NOTCH4Q99466 2003 aa20.64■□□□□ 0.89
UPF1-212ENST00000601689 MYH10P35580 1976 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 PRR33A8MZF0 331 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 SOAT2O75908 522 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 CYP2F1P24903 491 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 GABRR2P28476 465 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 CDH8P55286 799 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 MCCD1P59942 119 aaPredicted RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms