RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	PDE6C	P51160	858 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	GRIK3	Q13003	919 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	CFAP58	Q5T655	872 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	SCARA5	Q6ZMJ2	495 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	SLC47A2	Q86VL8	602 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	UBR7	Q8N806	425 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	AGPAT1	Q99943	283 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	FAM107B	Q9H098	131 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	MIOS	Q9NXC5	875 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	SMARCAL1	Q9NZC9	954 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	EHD2	Q9NZN4	543 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	POLI	Q9UNA4	740 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	RALGAPA2	Q2PPJ7	1873 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	MIF4GD	A9UHW6	222 aa	Known RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	PPEF2	O14830	753 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	KIAA0355	O15063	1070 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	RAD51C	O43502	376 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	GZMA	P12544	262 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	CD58	P19256	250 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	EN2	P19622	333 aa	Predicted RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	TNFAIP3	P21580	790 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	RPL9	P32969	192 aa	Known RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	CARS	P49589	748 aa	Known RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	TAF6	P49848	677 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	AFF1	P51825	1210 aa	Known RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	MTMR3	Q13615	1198 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	LRRC31	Q6UY01	552 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	DEFB128	Q7Z7B8	93 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	DAAM2	Q86T65	1068 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	ZNF677	Q86XU0	584 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	GLYCTK	Q8IVS8	523 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	RBBP8NL	Q8NC74	664 aa	Predicted RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	LNX1	Q8TBB1	728 aa	Predicted RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	EPS8L1	Q8TE68	723 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	GOLGA2P5	Q9HBQ8	144 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	NOCT	Q9UK39	431 aa	Known RBP	12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	NFU1	Q9UMS0	254 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	PCDHB7	Q9Y5E2	793 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	SNX9	Q9Y5X1	595 aa		12.41	□□□□□ -0.42
VRK3-223	ENST00000601341	KPNA7	A9QM74	516 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	SART1	O43290	800 aa	Known RBP	12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	CEP104	O60308	925 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	MTA2	O94776	668 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	TIMP1	P01033	207 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	POMC	P01189	267 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	ZNF132	P52740	706 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	SV2C	Q496J9	727 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	C11orf63	Q6NUN7	778 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	UBE2Q1	Q7Z7E8	422 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	NOP9	Q86U38	636 aa	Known RBP	12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	TSEN2	Q8NCE0	465 aa	Known RBP	12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	URGCP	Q8TCY9	931 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	CASKIN2	Q8WXE0	1202 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	DDX27	Q96GQ7	796 aa	Known RBP	12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	GDAP1L1	Q96MZ0	367 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	GDAP2	Q9NXN4	497 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	KANSL3	Q9P2N6	904 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	LRFN2	Q9ULH4	789 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	INPP5F	Q9Y2H2	1132 aa		12.4	□□□□□ -0.42
VRK3-223	ENST00000601341	HMGB1P1	B2RPK0	211 aa	Predicted RBP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	HOXA2	O43364	376 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	RAG1	P15918	1043 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	GBP1	P32455	592 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	CDH8	P55286	799 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	LILRA4	P59901	499 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	CDR2	Q01850	454 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	TUSC3	Q13454	348 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	IKBKE	Q14164	716 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	NOMO2	Q5JPE7	1267 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	CNKSR3	Q6P9H4	555 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	RPUSD2	Q8IZ73	545 aa	Known RBP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	ABI1	Q8IZP0	508 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	SLC35G2	Q8TBE7	412 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	SLC20A1	Q8WUM9	679 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	RIN2	Q8WYP3	895 aa	Predicted RBP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	UROC1	Q96N76	676 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	ZIM3	Q96PE6	472 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	CAPS2	Q9BXY5	557 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	SMYD3	Q9H7B4	428 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	ACP6	Q9NPH0	428 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	FAM114A2	Q9NRY5	505 aa		12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	SEPT11	Q9NVA2	429 aa	Known RBP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	PACSIN2	Q9UNF0	486 aa	Predicted RBP	12.39	□□□□□ -0.43
VRK3-223	ENST00000601341	GOLGA6L10	A0A0M3HER8	536 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	TRIM43B	A6NCK2	446 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	TMCO5B	A8MYB1	307 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	KRIT1	O00522	736 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	PODXL	O00592	558 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	CILP	O75339	1184 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	FGFR1	P11362	822 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	PAX3	P23760	479 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	GNA15	P30679	374 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	RAP1GAP	P47736	663 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	DRG2	P55039	364 aa	Known RBP	12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	INCA1	Q0VD86	236 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	TCTN1	Q2MV58	587 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	ZNF394	Q53GI3	561 aa		12.38	□□□□□ -0.43
VRK3-223	ENST00000601341	CLLU1OS	Q5K130	101 aa		12.38	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms