RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TCF25Q9BQ70 676 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CLSTN3Q9BQT9 956 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CERS4Q9HA82 394 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CRTAC1Q9NQ79 661 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 ENTPD7Q9NQZ7 604 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 BZW2Q9Y6E2 419 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 MYBPHLA2RUH7 354 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 ATP2C2O75185 946 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 GNA15P30679 374 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 PDE6CP51160 858 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 PSMC1P62191 440 aaKnown RBP15.26■□□□□ 0.03
UPF1-211ENST00000600868 CCDC173Q0VFZ6 552 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 SMARCB1Q12824 385 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 STILQ15468 1287 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 MEA1Q16626 185 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 SGO2Q562F6 1265 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 ARHGAP17Q68EM7 881 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 WDR59Q6PJI9 974 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 RSPO2Q6UXX9 243 aaPredicted RBP15.26■□□□□ 0.03
UPF1-211ENST00000600868 LRRTM3Q86VH5 581 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 MRPL43Q8N983 215 aaKnown RBP15.26■□□□□ 0.03
UPF1-211ENST00000600868 C12orf29Q8N999 325 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 EPS8L1Q8TE68 723 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 TMEM209Q96SK2 561 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 ZNF576Q9H609 170 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 ACP6Q9NPH0 428 aa15.26■□□□□ 0.03
UPF1-211ENST00000600868 ZNHIT6Q9NWK9 470 aaKnown RBP15.26■□□□□ 0.03
UPF1-211ENST00000600868 EPOPA6NHQ4 379 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 MED7O43513 233 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 SERPING1P05155 500 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 CD19P15391 556 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 CDK17Q00537 523 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 KLHL30Q0D2K2 578 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 GPR17Q13304 367 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 CNGA2Q16280 664 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 NFE2Q16621 373 aaPredicted RBP15.25■□□□□ 0.03
UPF1-211ENST00000600868 MDH1BQ5I0G3 518 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 HGSNATQ68CP4 663 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 CCDC186Q7Z3E2 898 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 NOP9Q86U38 636 aaKnown RBP15.25■□□□□ 0.03
UPF1-211ENST00000600868 ZNF677Q86XU0 584 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 ZNF606Q8WXB4 792 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 AUTS2Q8WXX7 1259 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 TFAP2BQ92481 460 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 DDX1Q92499 740 aaKnown RBP15.25■□□□□ 0.03
UPF1-211ENST00000600868 PPP1R9BQ96SB3 815 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 HNRNPABQ99729 332 aaKnown RBP15.25■□□□□ 0.03
UPF1-211ENST00000600868 ZSWIM1Q9BR11 485 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 NOCTQ9UK39 431 aaKnown RBP15.25■□□□□ 0.03
UPF1-211ENST00000600868 GTF3C4Q9UKN8 822 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 CDY1Q9Y6F8 540 aa15.25■□□□□ 0.03
UPF1-211ENST00000600868 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.24■□□□□ 0.03
UPF1-211ENST00000600868 C2orf71A6NGG8 1288 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 O00370 1275 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 ADAM12O43184 909 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 THAP12O43422 761 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 LPXNO60711 386 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 CALCAP01258 141 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 CNPP09543 421 aaKnown RBP15.24■□□□□ 0.03
UPF1-211ENST00000600868 OR4Q2P0C623 313 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 SKILP12757 684 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 RPL17P18621 184 aaKnown RBP15.24■□□□□ 0.03
UPF1-211ENST00000600868 FECHP22830 423 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 BRD2P25440 801 aaKnown RBP15.24■□□□□ 0.03
UPF1-211ENST00000600868 OR1D2P34982 312 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 NDUFV1P49821 464 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 CDR2Q01850 454 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 RAB33AQ14088 237 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 PLPP4Q5VZY2 271 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 TPGS2Q68CL5 300 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 C4orf50Q6ZRC1 276 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 GPIHBP1Q8IV16 184 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 MICAL1Q8TDZ2 1067 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 GDPD5Q8WTR4 605 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 C2orf15Q8WU43 125 aaKnown RBP15.24■□□□□ 0.03
UPF1-211ENST00000600868 CYFIP2Q96F07 1278 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 PCED1BQ96HM7 432 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 LPIN3Q9BQK8 851 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 SYT11Q9BT88 431 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 EMILIN2Q9BXX0 1053 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 B3GNT5Q9BYG0 378 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 HAUS4Q9H6D7 363 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 FAM49BQ9NUQ9 324 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 TMLHEQ9NVH6 421 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 MAFFQ9ULX9 164 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 CHD7Q9P2D1 2997 aa15.24■□□□□ 0.03
UPF1-211ENST00000600868 SSU72P8A0A1W2PR75 194 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 HIDE1A8MVS5 230 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 TEX28O15482 410 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ABLIM3O94929 683 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 C1RP00736 705 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ADH1AP07327 375 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 CCDC130P13994 396 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 CPB1P15086 417 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 IRS1P35568 1242 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ROR1Q01973 937 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 MAPK8IP2Q13387 824 aaPredicted RBP15.23■□□□□ 0.03
UPF1-211ENST00000600868 PTPROQ16827 1216 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 CCDC142Q17RM4 750 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 SLC39A12Q504Y0 691 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms