RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	YARS	P54577	528 aa	Known RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	OSTN	P61366	133 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	PPP2R3A	Q06190	1150 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	C1orf220	Q5T0J3	134 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	SPECC1L	Q69YQ0	1117 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	CD300LG	Q6UXG3	332 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	FAM84A	Q96KN4	292 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	KXD1	Q9BQD3	176 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	CCDC94	Q9BW85	323 aa	Predicted RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	BCO2	Q9BYV7	579 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	OSBPL6	Q9BZF3	934 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	HCFC1R1	Q9NWW0	138 aa		13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	RBAK	Q9NYW8	714 aa	Predicted RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	MRPS23	Q9Y3D9	190 aa	Known RBP	13.61	□□□□□ -0.23
UPF1-208	ENST00000600012	COL4A3	Q01955	1670 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	SMIM28	A0A1B0GU29	152 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012		A0A1W2PQC6	194 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	LRRN2	O75325	713 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	IGFBP6	P24592	240 aa	Predicted RBP	13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	MAGEA9	P43362	315 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	BRCC3	P46736	316 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	FMO5	P49326	533 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	PPP3CA	Q08209	521 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	GOLGA8F	Q08AF8	430 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	GOLGA8DP	Q0D2H9	430 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	KCNMA1	Q12791	1236 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	UBXN2B	Q14CS0	331 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	PSMD6	Q15008	389 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CBWD6	Q4V339	395 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	SLC44A4	Q53GD3	710 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	XKR4	Q5GH76	650 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CBWD3	Q5JTY5	395 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CBWD5	Q5RIA9	395 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	SLC8B1	Q6J4K2	584 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	BRSK2	Q8IWQ3	736 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	C3orf58	Q8NDZ4	430 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	PARD3B	Q8TEW8	1205 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	ING5	Q8WYH8	240 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	ERGIC2	Q96RQ1	377 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	HINFP	Q9BQA5	517 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CRACR2A	Q9BSW2	395 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	GOLGA2P5	Q9HBQ8	144 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	PDE11A	Q9HCR9	933 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	AVEN	Q9NQS1	362 aa	Predicted RBP	13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	SLC38A7	Q9NVC3	462 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	GDE1	Q9NZC3	331 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CPSF3	Q9UKF6	684 aa	Known RBP	13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	FBXO4	Q9UKT5	387 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	SIK3	Q9Y2K2	1263 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	PTPRJ	Q12913	1337 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	ITIH6	Q6UXX5	1313 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	CEP250	Q9BV73	2442 aa		13.6	□□□□□ -0.23
UPF1-208	ENST00000600012	F5	P12259	2224 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	DCHS1	Q96JQ0	3298 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ARHGEF37	A1IGU5	675 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	GOLGA6L6	A8MZA4	724 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012		I3L4J1	428 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	LAMTOR5	O43504	91 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ECI2	O75521	394 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	LRG1	P02750	347 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	RHO	P08100	348 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	DLAT	P10515	647 aa	Known RBP	13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ELF1	P32519	619 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	GCLM	P48507	274 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	MYL7	Q01449	175 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ROR1	Q01973	937 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	TBX2	Q13207	712 aa	Predicted RBP	13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ARID5B	Q14865	1188 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ZNF528	Q3MIS6	628 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	CCDC186	Q7Z3E2	898 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	ZNF461	Q8TAF7	563 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	TMC2	Q8TDI7	906 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	RUBCN	Q92622	972 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	LSM14B	Q9BX40	385 aa	Known RBP	13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	LTB4R2	Q9NPC1	389 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	IMPACT	Q9P2X3	320 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	GPR179	Q6PRD1	2367 aa		13.59	□□□□□ -0.23
UPF1-208	ENST00000600012	FAM170B	A6NMN3	283 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	PODXL	O00592	558 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	PRRG1	O14668	218 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	SYN3	O14994	580 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	SPTLC1	O15269	473 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	GYPC	P04921	128 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	CXCL8	P10145	99 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	PTPN2	P17706	415 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	MXI1	P50539	228 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	APBA1	Q02410	837 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	SOX4	Q06945	474 aa	Predicted RBP	13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	ENOX2	Q16206	610 aa	Known RBP	13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	SLC5A9	Q2M3M2	681 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	VARS2	Q5ST30	1063 aa	Known RBP	13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	ALKAL1	Q6UXT8	129 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	KIAA2013	Q8IYS2	634 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	CPLX3	Q8WVH0	158 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	FAM212A	Q96EL1	285 aa		13.58	□□□□□ -0.24

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