RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 DEFB118Q96PH6 123 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 TRIM31Q9BZY9 425 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 IP6K2Q9UHH9 426 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 UTP11Q9Y3A2 253 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 RALGAPA2Q2PPJ7 1873 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 F8VP50 259 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 PSTPIP1O43586 416 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 CHRNA3P32297 505 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 MAN1A1P33908 653 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 GABPB1Q06547 395 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 MYO1EQ12965 1108 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 NBPF20Q3BBV1 942 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 ANKS1BQ7Z6G8 1248 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 RHOT1Q8IXI2 618 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 NME8Q8N427 588 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 MRPL45Q9BRJ2 306 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 MTG1Q9BT17 334 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 XPNPEP3Q9NQH7 507 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 PCYOX1Q9UHG3 505 aa18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.03■□□□□ 0.48
SHKBP1-216ENST00000598201 GOLGA6BA6NDN3 693 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 GJC1P36383 396 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 SSR1P43307 286 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 DHX34Q14147 1143 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 ATP13A4Q4VNC1 1196 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 DUPD1Q68J44 220 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 DCUN1D2Q6PH85 259 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 CCDC137Q6PK04 289 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 DPH6Q7L8W6 267 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 FAM228AQ86W67 206 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 WNT8BQ93098 351 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 ERP44Q9BS26 406 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 MTUS1Q9ULD2 1270 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 NME7Q9Y5B8 376 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 SNX9Q9Y5X1 595 aa18.02■□□□□ 0.48
SHKBP1-216ENST00000598201 SMIM28A0A1B0GU29 152 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 FAM187AA6NFU0 413 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 GOLGA8SH3BPF8 625 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 M0QYV0 167 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 ERBB2P04626 1255 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 VDRP11473 427 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 FLT3P36888 993 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 KCNJ1P48048 391 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 CNGA2Q16280 664 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 C9orf57Q5W0N0 161 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 GDF6Q6KF10 455 aaPredicted RBP18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 ARRDC4Q8NCT1 418 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 SMG8Q8ND04 991 aaKnown RBP18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 BEST2Q8NFU1 509 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 UBA3Q8TBC4 463 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 PLVAPQ9BX97 442 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 UPF3AQ9H1J1 476 aaKnown RBP18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 SPC25Q9HBM1 224 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 MED4Q9NPJ6 270 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 PARP2Q9UGN5 583 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 GTF2IRD1Q9UHL9 959 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 FAN1Q9Y2M0 1017 aa18.02■□□□□ 0.47
SHKBP1-216ENST00000598201 KPNA6O60684 536 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 RFC1P35251 1148 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 COILP38432 576 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 GPD2P43304 727 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 TERF2Q15554 542 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 SGO2Q562F6 1265 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 HSP90B2PQ58FF3 399 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 TAF2Q6P1X5 1199 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 XYLT1Q86Y38 959 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 KATNAL2Q8IYT4 538 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 MREGQ8N565 214 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 C12orf29Q8N999 325 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 JOSD2Q8TAC2 188 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 FAM71BQ8TC56 605 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 C1orf54Q8WWF1 131 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 TMEM106CQ9BVX2 250 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 KLHL11Q9NVR0 708 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 STRIP2Q9ULQ0 834 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 IPPQ9Y573 584 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 SCN10AQ9Y5Y9 1956 aa18.01■□□□□ 0.47
SHKBP1-216ENST00000598201 PSMC1P62191 440 aaKnown RBP18■□□□□ 0.47
SHKBP1-216ENST00000598201 C12orf50Q8NA57 414 aaPredicted RBP18■□□□□ 0.47
SHKBP1-216ENST00000598201 PIK3R5Q8WYR1 880 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 NT5C1AQ9BXI3 368 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 HEMGNQ9BXL5 484 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 RAB17Q9H0T7 212 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 FAM114A2Q9NRY5 505 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 VPS18Q9P253 973 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 RALAP11233 206 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 HSPA9P38646 679 aaKnown RBP18■□□□□ 0.47
SHKBP1-216ENST00000598201 MRPS6P82932 125 aaKnown RBP18■□□□□ 0.47
SHKBP1-216ENST00000598201 TAP1Q03518 808 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 SOX4Q06945 474 aaPredicted RBP18■□□□□ 0.47
SHKBP1-216ENST00000598201 PDCLQ13371 301 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 XKR4Q5GH76 650 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 TXNRD3NBQ6F5E7 133 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 CCDC50Q8IVM0 306 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 LRRC52Q8N7C0 313 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 ATG4AQ8WYN0 398 aa18■□□□□ 0.47
SHKBP1-216ENST00000598201 LRRC19Q9H756 370 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms