RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 ZNF606Q8WXB4 792 aa14.33□□□□□ -0.12
VMP1-217ENST00000593168 TMEM176AQ96HP8 235 aa14.33□□□□□ -0.12
VMP1-217ENST00000593168 SEPT11Q9NVA2 429 aaKnown RBP14.33□□□□□ -0.12
VMP1-217ENST00000593168 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 GRXCR2A6NFK2 248 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 HOXA2O43364 376 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 THAP12O43422 761 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 EFCAB14O75071 495 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 ABL1P00519 1130 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 CYP1A1P04798 512 aaPredicted RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 UNGP13051 313 aaPredicted RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 IBSPP21815 317 aaPredicted RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 SSTR3P32745 418 aaPredicted RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 CLCNKBP51801 687 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 NDST1P52848 882 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 UPP1Q16831 310 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 CLEC16AQ2KHT3 1053 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 SOWAHAQ2M3V2 549 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 ZNF394Q53GI3 561 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 NOMO2Q5JPE7 1267 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 CLLU1OSQ5K130 101 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 CRIPAKQ8N1N5 446 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 RNF10Q8N5U6 811 aaKnown RBP14.32□□□□□ -0.12
VMP1-217ENST00000593168 SLC4A11Q8NBS3 891 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 NT5C1AQ9BXI3 368 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 ELOVL4Q9GZR5 314 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 DNAI2Q9GZS0 605 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 TFR2Q9UP52 801 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 INPP5FQ9Y2H2 1132 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 TTC3P53804 2025 aa14.32□□□□□ -0.12
VMP1-217ENST00000593168 A0A0A6YYK5 440 aaPredicted RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 ANKRD62A6NC57 917 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 CASTOR2A6NHX0 329 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 MED7O43513 233 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 HUS1O60921 280 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 FTLP02792 175 aaPredicted RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 TMEM253P0C7T8 217 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 VDRP11473 427 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 AARSP49588 968 aaKnown RBP eCLIP14.31□□□□□ -0.12
VMP1-217ENST00000593168 GALCP54803 685 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 GNG11P61952 73 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 HTRA4P83105 476 aaPredicted RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 DNTTIP2Q5QJE6 756 aaKnown RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 ACAD10Q6JQN1 1059 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 DCLRE1AQ6PJP8 1040 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 APPL2Q8NEU8 664 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 SP7Q8TDD2 431 aaPredicted RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 TWNKQ96RR1 684 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 MRPL45Q9BRJ2 306 aaKnown RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 PACSIN1Q9BY11 444 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 PDCL3Q9H2J4 239 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 TAS2R14Q9NYV8 317 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 TRIM10Q9UDY6 481 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 PUF60Q9UHX1 559 aaKnown RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 LRFN2Q9ULH4 789 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 GUCA1BQ9UMX6 200 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 PCDHGC3Q9UN70 934 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 INSL6Q9Y581 213 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 DUSP10Q9Y6W6 482 aa14.31□□□□□ -0.12
VMP1-217ENST00000593168 TDRD15B5MCY1 1934 aaKnown RBP14.31□□□□□ -0.12
VMP1-217ENST00000593168 TMCO5BA8MYB1 307 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 H3BQ06 376 aaPredicted RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 CYB561D2O14569 222 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 CALCAP01258 141 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 FGFR1P11362 822 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 WARSP23381 471 aaKnown RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 GNL1P36915 607 aaPredicted RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 DSC1Q08554 894 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 TCEAL1Q15170 157 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 STILQ15468 1287 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 NPAS4Q8IUM7 802 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 ABI1Q8IZP0 508 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 TMEM86AQ8N2M4 240 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 KIF18AQ8NI77 898 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 SPATA18Q8TC71 538 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 KBTBD7Q8WVZ9 684 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 TFAP2BQ92481 460 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 SECISBP2LQ93073 1101 aaKnown RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 MRPL38Q96DV4 380 aaKnown RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 SENP8Q96LD8 212 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 ZSWIM1Q9BR11 485 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 IRX2Q9BZI1 471 aaPredicted RBP14.3□□□□□ -0.12
VMP1-217ENST00000593168 ZNF518BQ9C0D4 1074 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 LHX5Q9H2C1 402 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 TBC1D13Q9NVG8 400 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 L1RE1Q9UN81 338 aa14.3□□□□□ -0.12
VMP1-217ENST00000593168 PIEZO1Q92508 2521 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 ARHGEF37A1IGU5 675 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 GABRDO14764 452 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 DDHD2O94830 711 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 LSM8O95777 96 aaKnown RBP14.29□□□□□ -0.12
VMP1-217ENST00000593168 AMHP03971 560 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 ALADP13716 330 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 CD19P15391 556 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 BRD2P25440 801 aaKnown RBP14.29□□□□□ -0.12
VMP1-217ENST00000593168 CDH5P33151 784 aaPredicted RBP14.29□□□□□ -0.12
VMP1-217ENST00000593168 GPC5P78333 572 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 CENPCQ03188 943 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 CNGA2Q16280 664 aa14.29□□□□□ -0.12
VMP1-217ENST00000593168 IFI16Q16666 785 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms