RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TACC1O75410 805 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 AKAP3O75969 853 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 FGFR1OPO95684 399 aaKnown RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 STAU1O95793 577 aaKnown RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 C4BPAP04003 597 aaKnown RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 CEBPBP17676 345 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 WARSP23381 471 aaKnown RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 CYP2F1P24903 491 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 GABRR2P28476 465 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 CDC25CP30307 473 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 GCLMP48507 274 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 DLG4P78352 724 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 LRRC63Q05C16 580 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 HTR4Q13639 388 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 TEAD2Q15562 447 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 WDR44Q5JSH3 913 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 TDRD10Q5VZ19 366 aaKnown RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 KLHL10Q6JEL2 608 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 SV2AQ7L0J3 742 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 BMP8AQ7Z5Y6 402 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 SIX5Q8N196 739 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 TCEAL4Q96EI5 215 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 FUBP3Q96I24 572 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 GBP4Q96PP9 640 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 PRRX2Q99811 253 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 RTP3Q9BQQ7 232 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 MKNK1Q9BUB5 465 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 UXTQ9UBK9 157 aaPredicted RBP11.63□□□□□ -0.55
CLIP3-203ENST00000586457 WNT16Q9UBV4 365 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 SCN1AP35498 2009 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 GABRDO14764 452 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ECI2O75521 394 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 GJA1P17302 382 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 PTPN1P18031 435 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 LMO2P25791 158 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 GTF2H1P32780 548 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 PSMC1P62191 440 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CLDN10P78369 228 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ENPEPQ07075 957 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CETN1Q12798 172 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CAMK4Q16566 473 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 DDR2Q16832 855 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 SLC5A9Q2M3M2 681 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ZACNQ401N2 412 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CCDC40Q4G0X9 1142 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 DCAF17Q5H9S7 520 aaPredicted RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 MDH1BQ5I0G3 518 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 KRT39Q6A163 491 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ANKRD40Q6AI12 368 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 SCARA5Q6ZMJ2 495 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CREBRFQ8IUR6 639 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 TTC9BQ8N6N2 239 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CXorf38Q8TB03 319 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ZSCAN18Q8TBC5 510 aaPredicted RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 GPR152Q8TDT2 470 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 MRPS31Q92665 395 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 FGF14Q92915 247 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 SMARCD2Q92925 531 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ELSPBP1Q96BH3 223 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 EEF2KMTQ96G04 330 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 LPIN3Q9BQK8 851 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 MRPL45Q9BRJ2 306 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 TRMT61BQ9BVS5 477 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CRISPLD1Q9H336 500 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 SMOC2Q9H3U7 446 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 BRD9Q9H8M2 597 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 METTL14Q9HCE5 456 aaKnown RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 C11orf16Q9NQ32 467 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ARMCX3Q9UH62 379 aaPredicted RBP11.62□□□□□ -0.55
CLIP3-203ENST00000586457 ZMYM5Q9UJ78 669 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 MAN1B1Q9UKM7 699 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 CA14Q9ULX7 337 aa11.62□□□□□ -0.55
CLIP3-203ENST00000586457 MYBPHLA2RUH7 354 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 TRIM66O15016 1216 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 SLC16A3O15427 465 aaKnown RBP11.61□□□□□ -0.55
CLIP3-203ENST00000586457 NARSO43776 548 aaKnown RBP11.61□□□□□ -0.55
CLIP3-203ENST00000586457 ATP2C2O75185 946 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 VNN2O95498 520 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 HLA-DRAP01903 254 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 TRIM49P0CI25 452 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 TRIM49CP0CI26 452 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 BDNFP23560 247 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 CCNE1P24864 410 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 AVPR1AP37288 418 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 EPHA5P54756 1037 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 TPD52L1Q16890 204 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-203ENST00000586457 CFAP221Q4G0U5 840 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 COBLL1Q53SF7 1204 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 FAM78AQ5JUQ0 283 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 PRSS36Q5K4E3 855 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 GPR158Q5T848 1215 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 SCARA3Q6AZY7 606 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 VSTM1Q6UX27 236 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 OSTM1Q86WC4 334 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 ADSSL1Q8N142 457 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 SPATA20Q8TB22 786 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 MYCBPAPQ8TBZ2 947 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 KBTBD7Q8WVZ9 684 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 TMEM8AQ9HCN3 771 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms