RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 XPO4Q9C0E2 1151 aaKnown RBP11.15□□□□□ -0.62
SS18-221ENST00000582448 UNC45AQ9H3U1 944 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 MFSD1Q9H3U5 465 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 ZHX3Q9H4I2 956 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 ZSWIM4Q9H7M6 989 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
SS18-221ENST00000582448 KCND2Q9NZV8 630 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 RNF112Q9ULX5 631 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 GDAQ9Y2T3 454 aa11.15□□□□□ -0.62
SS18-221ENST00000582448 USP34Q70CQ2 3546 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 ARHGEF35A5YM69 484 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 WDR64B1ANS9 1081 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 VTNP04004 478 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 ASGR2P07307 311 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 GAP43P17677 238 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 KCNC3Q14003 757 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 CTTNQ14247 550 aaKnown RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 SGO2Q562F6 1265 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 FAM26FQ5R3K3 315 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 RARS2Q5T160 578 aaKnown RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 FAM160B1Q5W0V3 765 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 ZNF746Q6NUN9 644 aaPredicted RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 SWSAP1Q6NVH7 229 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 KCNT2Q6UVM3 1135 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 TMEM184AQ6ZMB5 413 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 LRRC55Q6ZSA7 311 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 STXBP4Q6ZWJ1 553 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 KCNK18Q7Z418 384 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 FAM228AQ86W67 206 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 SMAP1Q8IYB5 467 aaPredicted RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 GUF1Q8N442 669 aaKnown RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 C12orf76Q8N812 135 aaPredicted RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 FLCNQ8NFG4 579 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 CASP10Q92851 521 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 ZNF668Q96K58 619 aaPredicted RBP11.14□□□□□ -0.63
SS18-221ENST00000582448 ZNF558Q96NG5 402 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 BHMT2Q9H2M3 363 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 POMKQ9H5K3 350 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 CYP4F12Q9HCS2 524 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 SLC39A2Q9NP94 309 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 TMEM161AQ9NX61 479 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 SORCS3Q9UPU3 1222 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 MAPK8IP1Q9UQF2 711 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 COL4A3BPQ9Y5P4 624 aa11.14□□□□□ -0.63
SS18-221ENST00000582448 NFASCO94856 1347 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 PLXNA4Q9HCM2 1894 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 NT5C1B-RDH14C9J2C7 533 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 SLITRK3O94933 977 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 CXCL14O95715 111 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ATP1A3P13637 1013 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ZNF18P17022 549 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ZSCAN20P17040 1043 aaPredicted RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 HOXB8P17481 243 aaPredicted RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 CYP11B2P19099 503 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 CCNE1P24864 410 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 EEF1GP26641 437 aaKnown RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 QARSP47897 775 aaKnown RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 CRYBB1P53674 252 aaPredicted RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 SLC12A3P55017 1021 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 LRRC63Q05C16 580 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 STK4Q13043 487 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ITGB3BPQ13352 177 aaPredicted RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 BEND4Q6ZU67 534 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 FRMD5Q7Z6J6 570 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 UBALD2Q8IYN6 164 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 CSGALNACT2Q8N6G5 542 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 LRRC15Q8TF66 581 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 CASD1Q96PB1 797 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 FAM83CQ9BQN1 747 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 LXNQ9BS40 222 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 BCO2Q9BYV7 579 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 TMEM117Q9H0C3 514 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 KCNF1Q9H3M0 494 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 THAP9Q9H5L6 903 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ZNF302Q9NR11 478 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 SAMSN1Q9NSI8 373 aaKnown RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 SPG21Q9NZD8 308 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 RGL1Q9NZL6 768 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 DBR1Q9UK59 544 aaKnown RBP11.13□□□□□ -0.63
SS18-221ENST00000582448 LZTS1Q9Y250 596 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ZKSCAN5Q9Y2L8 839 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 HCFC2Q9Y5Z7 792 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 KIAA1671Q9BY89 1806 aa11.13□□□□□ -0.63
SS18-221ENST00000582448 ZDBF2Q9HCK1 2354 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 PRR23AA6NEV1 266 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 GAS2O43903 313 aaKnown RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 CLASP2O75122 1294 aaKnown RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 CCNE2O96020 404 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 CYP11A1P05108 521 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 TPM1P09493 284 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 SLC26A2P50443 739 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 PSMC5P62195 406 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 FAM189BP81408 668 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 SMC1AQ14683 1233 aaKnown RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.12□□□□□ -0.63
SS18-221ENST00000582448 HSP90AA4PQ58FG1 418 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 ZNF484Q5JVG2 852 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 CDKAL1Q5VV42 579 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 MIS18BP1Q6P0N0 1132 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 ABHD15Q6UXT9 468 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms