RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GOLGA8IPA6NC78 632 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 GOLGA8JA6NMD2 632 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 CCL16O15467 120 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 CLDN3O15551 220 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 AKR1B10O60218 316 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 KIF5CO60282 957 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 TSPAN1O60635 241 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 ZMYND10O75800 440 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 NDUFA10O95299 355 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 SERPING1P05155 500 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 PRKCBP05771 671 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 TRIM49P0CI25 452 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 TRIM49CP0CI26 452 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 PON1P27169 355 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 MXI1P50539 228 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 ATXN1P54253 815 aaKnown RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 POU5F1BQ06416 359 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 DSC1Q08554 894 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 MLF2Q15773 248 aaPredicted RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 ASIC2Q16515 512 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 PPM1LQ5SGD2 360 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 KLHDC7AQ5VTJ3 777 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 CDCA2Q69YH5 1023 aaPredicted RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 NOTUMQ6P988 496 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 LILRA6Q6PI73 481 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 TSSK4Q6SA08 328 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 RAD9BQ6WBX8 426 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 APBB1IPQ7Z5R6 666 aaPredicted RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 KIAA1328Q86T90 577 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 HACE1Q8IYU2 909 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 RNF168Q8IYW5 571 aaPredicted RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 EHBP1Q8NDI1 1231 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 SECISBP2LQ93073 1101 aaKnown RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 CCDC127Q96BQ5 260 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 SAAL1Q96ER3 474 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 PRIMPOLQ96LW4 560 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 FNBP1Q96RU3 617 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 KXD1Q9BQD3 176 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 FAM213AQ9BRX8 229 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 MSTO1Q9BUK6 570 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 RHOBTB2Q9BYZ6 727 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 NHEJ1Q9H9Q4 299 aaPredicted RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.89□□□□□ -0.67
SS18-207ENST00000577636 ANKFY1Q9P2R3 1169 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 ADAM28Q9UKQ2 775 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 AGO2Q9UKV8 859 aaKnown RBP10.89□□□□□ -0.67
SS18-207ENST00000577636 CDH7Q9ULB5 785 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 USP18Q9UMW8 372 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 GIT1Q9Y2X7 761 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 ADGRG1Q9Y653 693 aa10.89□□□□□ -0.67
SS18-207ENST00000577636 DCDC2BA2VCK2 349 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 USP27XA6NNY8 438 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 EIF3CLB5ME19 914 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 TISP43B9A030 160 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 RNF225M0QZC1 329 aaPredicted RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 TOM1L1O75674 476 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 NPTXRO95502 500 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 UCHL3P15374 230 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 FERP16591 822 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 SLC9A1P19634 815 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 ANXA13P27216 316 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 ADSSP30520 456 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 AXLP30530 894 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 STAT1P42224 750 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 GCLMP48507 274 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 PRPF4BQ13523 1007 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 SURF1Q15526 300 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 LIN9Q5TKA1 542 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 KRT39Q6A163 491 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 TRIM65Q6PJ69 517 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 CBWD2Q8IUF1 395 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 ITFG1Q8TB96 612 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 BAP1Q92560 729 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 FGF13Q92913 245 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 FAM81BQ96LP2 452 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 EIF3CQ99613 913 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 DESI2Q9BSY9 194 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 TARS2Q9BW92 718 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 TSGA10Q9BZW7 698 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 INTS2Q9H0H0 1204 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 GANQ9H2C0 597 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 NXF3Q9H4D5 531 aaKnown RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 TMEM8AQ9HCN3 771 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 PRMT7Q9NVM4 692 aaPredicted RBP10.88□□□□□ -0.67
SS18-207ENST00000577636 FNIP2Q9P278 1114 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 STYXL1Q9Y6J8 313 aa10.88□□□□□ -0.67
SS18-207ENST00000577636 GVINP1Q7Z2Y8 2422 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 SSU72P8A0A1W2PR75 194 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 CASTOR2A6NHX0 329 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 ACKR2O00590 384 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 PMM2O15305 246 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 KRT86O43790 486 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 NOL4O94818 638 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 EFEMP2O95967 443 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 C8AP07357 584 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 DLATP10515 647 aaKnown RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 ARF4P18085 180 aaPredicted RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 AP3M2P53677 418 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 CYP24A1Q07973 514 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 KLHL30Q0D2K2 578 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms