RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 OASLQ15646 514 aaKnown RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 FAM187BQ17R55 369 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 WDR72Q3MJ13 1102 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 CCDC121Q6ZUS5 278 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 ARMCX6Q7L4S7 300 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 FASTKD5Q7L8L6 764 aaKnown RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 PIGWQ7Z7B1 504 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 C1orf127Q8N9H9 656 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 KAT2BQ92831 832 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 RBM15Q96T37 977 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS53-220ENST00000576149 OSBPL7Q9BZF2 842 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 PRMT7Q9NVM4 692 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 ERAP1Q9NZ08 941 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 CTNNAL1Q9UBT7 734 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 LGALS13Q9UHV8 139 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 CYTH4Q9UIA0 394 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 CAPN7Q9Y6W3 813 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 LRRD1A4D1F6 860 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 C3orf70A6NLC5 250 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 NFICP08651 508 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 KRT3P12035 628 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 MAGEA4P43358 317 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 PHKA2P46019 1235 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 ARSEP51690 589 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 VCPP55072 806 aaKnown RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 CDH8P55286 799 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 ACTN3Q08043 901 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 STAT4Q14765 748 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 ZNF484Q5JVG2 852 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 WDR78Q5VTH9 848 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 VSTM1Q6UX27 236 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 LRRC34Q8IZ02 419 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 FNIP1Q8TF40 1166 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 NKD2Q969F2 451 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 ACSF2Q96CM8 615 aaPredicted RBP10.63□□□□□ -0.71
VPS53-220ENST00000576149 CDCA5Q96FF9 252 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 C9orf72Q96LT7 481 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 SDCBP2Q9H190 292 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 IGSF5Q9NSI5 407 aa10.63□□□□□ -0.71
VPS53-220ENST00000576149 TMEM120BA0PK00 339 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ASB14A6NK59 587 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 LACTBL1A8MY62 500 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 GOLGA8SH3BPF8 625 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ITGAVP06756 1048 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ABHD2P08910 425 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ZSCAN5DPP0CG00 497 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 STAG3L1P0CL83 205 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CETPP11597 493 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 INSRRP14616 1297 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CREB1P16220 341 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 PSMA2P25787 234 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 GSCP56915 257 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 SLC25A11Q02978 314 aaKnown RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 ARHGAP1Q07960 439 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 TTLL12Q14166 644 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 AMHR2Q16671 573 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 DNAJC14Q6Y2X3 702 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 ARFGAP1Q8N6T3 406 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CCDC197Q8NCU1 140 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CXorf38Q8TB03 319 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 OPTNQ96CV9 577 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CCDC77Q9BR77 488 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 TJP2Q9UDY2 1190 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 TPX2Q9ULW0 747 aaKnown RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 EFR3BQ9Y2G0 817 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CDH16O75309 829 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 LRCH4O75427 683 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ITGBL1O95965 494 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 MCF2P10911 925 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ETS1P14921 441 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 IFNAR2P48551 515 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 PSMC1P62191 440 aaKnown RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 IGBP1P78318 339 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 TNFAIP2Q03169 654 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CCDC142Q17RM4 750 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 LACTB2Q53H82 288 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 JADE1Q6IE81 842 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 KIAA0319LQ8IZA0 1049 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CYP4X1Q8N118 509 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 LINC01465Q8N7H1 131 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 SLC4A11Q8NBS3 891 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 SHCBP1Q8NEM2 672 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 JOSD2Q8TAC2 188 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 SLC35B2Q8TB61 432 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 P3H4Q92791 437 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 TWNKQ96RR1 684 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 CPXM1Q96SM3 734 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 VRTNQ9H8Y1 702 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ACTR5Q9H9F9 607 aaPredicted RBP10.62□□□□□ -0.71
VPS53-220ENST00000576149 EURLQ9NYK6 297 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 WDR35Q9P2L0 1181 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 NAALADL1Q9UQQ1 740 aa10.62□□□□□ -0.71
VPS53-220ENST00000576149 ANK1P16157 1881 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 SBF1O95248 1867 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 GOLGA6L7A0A1B0GV03 622 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 CILPO75339 1184 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ITGB3P05106 788 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 KRT7P08729 469 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ATICP31939 592 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 PTPN11Q06124 597 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms