RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LRRC37A2A6NM11 1700 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 SIGLEC16A6NMB1 481 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 POC1B-GALNT4F8VUJ3 575 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 SGK1O00141 431 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 PRPF4O43172 522 aaKnown RBP eCLIP23.98■■□□□ 1.431e-8■■□□□ 11.6
VPS53-211ENST00000571805 USP2O75604 605 aaPredicted RBP23.98■■□□□ 1.43
VPS53-211ENST00000571805 ATP6V1G2O95670 118 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 MARK3P27448 753 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 PLCB3Q01970 1234 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 MGAT5Q09328 741 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 PKN2Q16513 984 aaKnown RBP23.98■■□□□ 1.43
VPS53-211ENST00000571805 SMYD5Q6GMV2 418 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 TSHZ1Q6ZSZ6 1077 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 EEPD1Q7L9B9 569 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 ZBED8Q8IZ13 594 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 JOSD2Q8TAC2 188 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 ECT2Q9H8V3 914 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 POLIQ9UNA4 740 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 EFR3BQ9Y2G0 817 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 FARP1Q9Y4F1 1045 aaPredicted RBP23.98■■□□□ 1.43
VPS53-211ENST00000571805 SPAG7O75391 227 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 ARIH2O95376 493 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 IL1R2P27930 398 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 SLC18A1P54219 525 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 YWHAEP62258 255 aaKnown RBP23.98■■□□□ 1.43
VPS53-211ENST00000571805 WLSQ5T9L3 541 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 MPZL3Q6UWV2 235 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 TRIM50Q86XT4 487 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 THNSL1Q8IYQ7 743 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 KIAA0319LQ8IZA0 1049 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 RMDN2Q96LZ7 410 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 LHX5Q9H2C1 402 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 RXFP1Q9HBX9 757 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 SAE1Q9UBE0 346 aaPredicted RBP23.98■■□□□ 1.43
VPS53-211ENST00000571805 SNCAIPQ9Y6H5 919 aa23.98■■□□□ 1.43
VPS53-211ENST00000571805 GOLGA8SH3BPF8 625 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 MAGEB2O15479 319 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 B4GALT4O60513 344 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 LRCH4O75427 683 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 KRT3P12035 628 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 PSMA2P25787 234 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 PSMC4P43686 418 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 BAG6P46379 1132 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 PREPLQ4J6C6 727 aaPredicted RBP23.97■■□□□ 1.43
VPS53-211ENST00000571805 CENPUQ71F23 418 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 GRAMD1AQ96CP6 724 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 GPR20Q99678 358 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 TRABDQ9H4I3 376 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 VPS37BQ9H9H4 285 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 KIF9Q9HAQ2 790 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 PPP2R3BQ9Y5P8 575 aa23.97■■□□□ 1.43
VPS53-211ENST00000571805 GAS2O43903 313 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 IFNB1P01574 187 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 PDIA2Q13087 525 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 TAZQ16635 292 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 HSDL1Q3SXM5 330 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 RNF43Q68DV7 783 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 SPATC1LQ9H0A9 340 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 C2orf40Q9H1Z8 148 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 PNMA3Q9UL41 463 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 UTRNP46939 3433 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 NDC80O14777 642 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 LGR5O75473 907 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 NQO1P15559 274 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 POLR2BP30876 1174 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 RDXP35241 583 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 HIRAP54198 1017 aaPredicted RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 GPX6P59796 221 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 KCNJ2P63252 427 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 LACTBP83111 547 aaPredicted RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 RIPK1Q13546 671 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 ACVR2BQ13705 512 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 RASA2Q15283 850 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 NCAPG2Q86XI2 1143 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 CEP120Q8N960 986 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 ACTL9Q8TC94 416 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 PITPNM3Q9BZ71 974 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 R3HDMLQ9H3Y0 253 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 FZD8Q9H461 694 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 ZWILCHQ9H900 591 aa23.96■■□□□ 1.43
VPS53-211ENST00000571805 NXF1Q9UBU9 619 aaKnown RBP23.96■■□□□ 1.43
VPS53-211ENST00000571805 ACKR2O00590 384 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 TNNC2P02585 160 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 GDF10P55107 478 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 OSTNP61366 133 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 OTUD4Q01804 1114 aaKnown RBP23.95■■□□□ 1.43
VPS53-211ENST00000571805 SMTNL2Q2TAL5 461 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 KCNT1Q5JUK3 1230 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 CAPN12Q6ZSI9 719 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 CCDC91Q7Z6B0 441 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 FNIP1Q8TF40 1166 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 C10orf88Q9H8K7 445 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 NOD2Q9HC29 1040 aa23.95■■□□□ 1.43
VPS53-211ENST00000571805 SOCS7O14512 581 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 B4GALT5O43286 388 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 BANF1O75531 89 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 KDELR1P24390 212 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 RAP1GAPP47736 663 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 DYNLT1P63172 113 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 GAD2Q05329 585 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms