RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NOMO3P69849 1222 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ACAP1Q15027 740 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 SGO2Q562F6 1265 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 C9orf57Q5W0N0 161 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ZNF572Q7Z3I7 529 aaPredicted RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 ERICH1Q86X53 443 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ZDHHC17Q8IUH5 632 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 TMEM192Q8IY95 271 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 MCOLN2Q8IZK6 566 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 LRRC57Q8N9N7 239 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 APPL2Q8NEU8 664 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 CXorf38Q8TB03 319 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ACTRT1Q8TDG2 376 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 SLC20A1Q8WUM9 679 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ZNF653Q96CK0 615 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 HEXIM2Q96MH2 286 aaKnown RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 RUNDC3BQ96NL0 473 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 OSBPL9Q96SU4 736 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 PCDHB18PQ96TA0 734 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 THAP2Q9H0W7 228 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 CARD9Q9H257 536 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 SNX25Q9H3E2 840 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 ELAC1Q9H777 363 aaKnown RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 ABCB6Q9NP58 842 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 PAK6Q9NQU5 681 aaPredicted RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 RGS18Q9NS28 235 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 HESX1Q9UBX0 185 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 CNOT8Q9UFF9 292 aaKnown RBP8.46□□□□□ -1.06
VPS39-213ENST00000570062 IP6K2Q9UHH9 426 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 DSEQ9UL01 958 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 OGDHLQ9ULD0 1010 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 PADI3Q9ULW8 664 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 GRIN2DO15399 1336 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 WDR81Q562E7 1941 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 MCM3APO60318 1980 aa8.46□□□□□ -1.06
VPS39-213ENST00000570062 CUL9Q8IWT3 2517 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 GOLGA6L10A0A0M3HER8 536 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 TARSL2A2RTX5 802 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 CCDC188H7C350 402 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 ENC1O14682 589 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 INPPL1O15357 1258 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 ABL1P00519 1130 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 WEE2P0C1S8 567 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 CKBP12277 381 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 CD19P15391 556 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 SELPP16109 830 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 CD58P19256 250 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 MMP8P22894 467 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 CDK7P50613 346 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 DSC3Q14574 896 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 ZNF268Q14587 947 aaPredicted RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 LPIN1Q14693 890 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 TRIM71Q2Q1W2 868 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 C1orf53Q5VUE5 145 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 PLEKHA7Q6IQ23 1121 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 LCLAT1Q6UWP7 414 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 SLC24A5Q71RS6 500 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 NT5DC3Q86UY8 548 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 METTL23Q86XA0 190 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 CRYBG2Q8N1P7 616 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 SMG8Q8ND04 991 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 ZNF564Q8TBZ8 553 aaPredicted RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 IPO4Q8TEX9 1081 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 CYFIP2Q96F07 1278 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 HES6Q96HZ4 224 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 MRGPRX2Q96LB1 330 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 TOX2Q96NM4 488 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 ARID3AQ99856 593 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 USB1Q9BQ65 265 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 TLR10Q9BXR5 811 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 PACSIN1Q9BY11 444 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 NXF3Q9H4D5 531 aaKnown RBP8.45□□□□□ -1.06
VPS39-213ENST00000570062 SNX9Q9Y5X1 595 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 PTCH2Q9Y6C5 1203 aa8.45□□□□□ -1.06
VPS39-213ENST00000570062 A0A0U1RQJ8 604 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 DCDC2CA8MYV0 355 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 BUB1BO60566 1050 aaPredicted RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 ERLIN1O75477 346 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 TADA3O75528 432 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 CTSHP09668 335 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 WARSP23381 471 aaKnown RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 AKAP5P24588 427 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 CTNNA2P26232 953 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 GNL1P36915 607 aaPredicted RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 ACADSBP45954 432 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 RAD23BP54727 409 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 FAM189BP81408 668 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 PTP4A2Q12974 167 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 GRIK3Q13003 919 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 PIGHQ14442 188 aaPredicted RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 MAPRE1Q15691 268 aaKnown RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 LRRC38Q5VT99 294 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 NAA35Q5VZE5 725 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 ARHGAP17Q68EM7 881 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 DCLRE1AQ6PJP8 1040 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 GLB1LQ6UWU2 654 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 MON1BQ7L1V2 547 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 LRRC8DQ7L1W4 858 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 LIMS2Q7Z4I7 341 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 CREG2Q8IUH2 290 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms