RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 PHF13Q86YI8 300 aaPredicted RBP9.24□□□□□ -0.93
LINC00558-201ENST00000569422 WDR49Q8IV35 697 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 CCDC197Q8NCU1 140 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 UBA3Q8TBC4 463 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 ATXN2LQ8WWM7 1075 aaKnown RBP9.24□□□□□ -0.93
LINC00558-201ENST00000569422 HSPH1Q92598 858 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 ANKRD36BP1Q96IX9 119 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 RSPH9Q9H1X1 276 aaPredicted RBP9.24□□□□□ -0.93
LINC00558-201ENST00000569422 TMEM134Q9H6X4 195 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 FGFR1OP2Q9NVK5 253 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 HMGXB4Q9UGU5 601 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 AKT3Q9Y243 479 aa9.24□□□□□ -0.93
LINC00558-201ENST00000569422 IGKV6D-21A0A0A0MT36 114 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 MAP3K6O95382 1288 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 PIGRP01833 764 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 NFICP08651 508 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 IQCF3P0C7M6 154 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CNGA2Q16280 664 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CCNG2Q16589 344 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CDO1Q16878 200 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 KATNAL2Q8IYT4 538 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 EXD1Q8NHP7 514 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 LRRN4Q8WUT4 740 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 SLITRK1Q96PX8 696 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 NEU2Q9Y3R4 380 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 FER1L6Q2WGJ9 1857 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 SSC5DA1L4H1 1573 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 A6NJR5 290 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CD48P09326 243 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 KRT3P12035 628 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 HNRNPH1P31943 449 aaKnown RBP9.23□□□□□ -0.93
LINC00558-201ENST00000569422 EFNA5P52803 228 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 GAD2Q05329 585 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 TMEM62Q0P6H9 643 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 E2F5Q15329 346 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 TAF5Q15542 800 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 RHBDF2Q6PJF5 856 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 FAM47EQ6ZV65 393 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 ZBED8Q8IZ13 594 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 MMP19Q99542 508 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CALN1Q9BXU9 219 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 STMN4Q9H169 189 aaPredicted RBP9.23□□□□□ -0.93
LINC00558-201ENST00000569422 SMYD3Q9H7B4 428 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 RPF1Q9H9Y2 349 aaKnown RBP9.23□□□□□ -0.93
LINC00558-201ENST00000569422 KIF9Q9HAQ2 790 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 HOMER3Q9NSC5 361 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 HAUS2Q9NVX0 235 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 CYTH4Q9UIA0 394 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 NAALADL1Q9UQQ1 740 aa9.23□□□□□ -0.93
LINC00558-201ENST00000569422 A0A087WZ62 844 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 TJP3O95049 919 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CALB1P05937 261 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 HOXC6P09630 235 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 PECAM1P16284 738 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 MAGEA4P43358 317 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 MPP2Q14168 576 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 PTPN20Q4JDL3 420 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 SPDYCQ5MJ68 293 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 C6orf89Q6UWU4 347 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ZPBP2Q6X784 338 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 SPOCD1Q6ZMY3 1216 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 SPATS2Q86XZ4 545 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 GPC2Q8N158 579 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ANKS4BQ8N8V4 417 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 HEXIM2Q96MH2 286 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 TWNKQ96RR1 684 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 FDXACB1Q9BRP7 624 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 METTL5Q9NRN9 209 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CPSF3Q9UKF6 684 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 PSME4Q14997 1843 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 EXOC1LA0A1B0GW35 172 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ZBTB42B2RXF5 422 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RASA4BC9J798 803 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 GPR25O00155 361 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RASA4O43374 803 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 LIASO43766 372 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ZNF286BP0CG31 522 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 STX2P32856 288 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 MAN1A1P33908 653 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 MXD4Q14582 209 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 SH3D19Q5HYK7 790 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ZNF667Q5HYK9 610 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CELF3Q5SZQ8 465 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 MPZL3Q6UWV2 235 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RCOR2Q8IZ40 523 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 C4orf33Q8N1A6 199 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ZNF317Q96PQ6 595 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CPXM1Q96SM3 734 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RBPJLQ9UBG7 517 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 KIAA1217Q5T5P2 1943 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 LACTBL1A8MY62 500 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 KIF3CO14782 793 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 FAM189A1O60320 539 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CST8O60676 142 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 ITGBL1O95965 494 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 PAEPP09466 180 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 COL11A1P12107 1806 aaPredicted RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 TCF3P15923 654 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 KRT15P19012 456 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 IL1R2P27930 398 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms