RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	GABRD	O14764	452 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	EXOC3	O60645	756 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZNF202	O95125	648 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	CST3	P01034	146 aa	Predicted RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	RPN1	P04843	607 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	DCN	P07585	359 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM163B	P0C2L3	166 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	DLAT	P10515	647 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	PSMC3	P17980	439 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	FCAR	P24071	287 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	PCSK1	P29120	753 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	VIPR2	P41587	438 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	RPL10A	P62906	217 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	MLF2	Q15773	248 aa	Predicted RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	VIT	Q6UXI7	678 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	LIMS2	Q7Z4I7	341 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	GPIHBP1	Q8IV16	184 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	SLC9A9	Q8IVB4	645 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	MFSD6L	Q8IWD5	586 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	CCDC105	Q8IYK2	499 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ADGRF2	Q8IZF7	708 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	FSIP1	Q8NA03	581 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	GIPC2	Q8TF65	315 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZNF516	Q92618	1163 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	CCDC47	Q96A33	483 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	CCDC127	Q96BQ5	260 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	MMS19	Q96T76	1030 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	NELL2	Q99435	816 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	PHOX2B	Q99453	314 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	CGRRF1	Q99675	332 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	LPIN3	Q9BQK8	851 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	PI4K2A	Q9BTU6	479 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	DDX23	Q9BUQ8	820 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ATXN3L	Q9H3M9	355 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	BRD9	Q9H8M2	597 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZNF334	Q9HCZ1	680 aa	Predicted RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	ABCB6	Q9NP58	842 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	TMLHE	Q9NVH6	421 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	DMAC2	Q9NW81	257 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	DDX43	Q9NXZ2	648 aa	Known RBP	7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	GTF3C4	Q9UKN8	822 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	PTPRJ	Q12913	1337 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	SDK1	Q7Z5N4	2213 aa		7.42	□□□□□ -1.22
SF3B3-209	ENST00000567635	HEPACAM2	A8MVW5	462 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PDXK	O00764	312 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	DPYSL4	O14531	572 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZNF263	O14978	683 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PHACTR2	O75167	634 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ATP2C2	O75185	946 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	KIF20A	O95235	890 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PDGFRB	P09619	1106 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CSH1	P0DML2	217 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CSH2	P0DML3	217 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ATF6	P18850	670 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	WARS	P23381	471 aa	Known RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ACAT1	P24752	427 aa	Known RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CYP2F1	P24903	491 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	LMO2	P25791	158 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GABRR2	P28476	465 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	WEE1	P30291	646 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CDC25C	P30307	473 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GDI1	P31150	447 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GNL1	P36915	607 aa	Predicted RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	AP3M2	P53677	418 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	TRPC3	Q13507	836 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GRM2	Q14416	872 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GSE1	Q14687	1217 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ANGPT1	Q15389	498 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	MAPRE1	Q15691	268 aa	Known RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	DDR2	Q16832	855 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	INTS6L	Q5JSJ4	861 aa	Known RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GPR158	Q5T848	1215 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM171B	Q6P995	826 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ZNF852	Q6ZMS4	543 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	KRBA2	Q6ZNG9	492 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	OSTM1	Q86WC4	334 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	ARID3B	Q8IVW6	561 aa	Predicted RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	YAF2	Q8IY57	180 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	KIAA0895	Q8NCT3	520 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PJA1	Q8NG27	643 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	TMEM174	Q8WUU8	243 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	DEPDC1B	Q8WUY9	529 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	DNASE1L2	Q92874	299 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	IRF7	Q92985	503 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CCDC34	Q96HJ3	373 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	GCNA	Q96QF7	691 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PKMYT1	Q99640	499 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	OSBPL6	Q9BZF3	934 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	FOXQ1	Q9C009	403 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	SNX25	Q9H3E2	840 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	KCTD10	Q9H3F6	313 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	TASP1	Q9H6P5	420 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	TRPV5	Q9NQA5	729 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	HEBP1	Q9NRV9	189 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	FAM86C1	Q9NVL1	165 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	DLGAP2	Q9P1A6	1054 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	CDH9	Q9ULB4	789 aa		7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	MRPS17	Q9Y2R5	130 aa	Known RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	MTF2	Q9Y483	593 aa	Predicted RBP	7.41	□□□□□ -1.22
SF3B3-209	ENST00000567635	PATJ	Q8NI35	1801 aa		7.41	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms