RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 BFSP1Q12934 665 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 DGKKQ5KSL6 1271 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CMTM8Q8IZV2 173 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 SPEM1Q8N4L4 309 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 NOC3LQ8WTT2 800 aaKnown RBP20.13■□□□□ 0.81
CLN3-218ENST00000565688 ZFYVE19Q96K21 471 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 ZNF396Q96N95 335 aaPredicted RBP20.13■□□□□ 0.81
CLN3-218ENST00000565688 SLC46A2Q9BY10 475 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 FGFBP2Q9BYJ0 223 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 BACH2Q9BYV9 841 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 PCIF1Q9H4Z3 704 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 PDE11AQ9HCR9 933 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 FOXD4L1Q9NU39 408 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 DDX43Q9NXZ2 648 aaKnown RBP20.13■□□□□ 0.81
CLN3-218ENST00000565688 L1RE1Q9UN81 338 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 PPP6R2O75170 966 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 PRPF40AO75400 957 aaKnown RBP20.12■□□□□ 0.81
CLN3-218ENST00000565688 KRT19P08727 400 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 HMGA1P17096 107 aaKnown RBP20.12■□□□□ 0.81
CLN3-218ENST00000565688 AVPR1AP37288 418 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 SOX9P48436 509 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 LHX1P48742 406 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 NLRP12P59046 1061 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 RPL10AP62906 217 aaKnown RBP20.12■□□□□ 0.81
CLN3-218ENST00000565688 MYO1EQ12965 1108 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 SURF1Q15526 300 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 TOP6BLQ8N6T0 577 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 CXorf38Q8TB03 319 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 RMDN1Q96DB5 314 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 ANKRD36BP1Q96IX9 119 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 PI4K2AQ9BTU6 479 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 MTMR12Q9C0I1 747 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 TMLHEQ9NVH6 421 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 KBTBD4Q9NVX7 518 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 GTSE1Q9NYZ3 720 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 UXTQ9UBK9 157 aaPredicted RBP20.12■□□□□ 0.81
CLN3-218ENST00000565688 SNX9Q9Y5X1 595 aa20.12■□□□□ 0.81
CLN3-218ENST00000565688 ZNF233A6NK53 670 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 F11P03951 625 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 PCSK1P29120 753 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 PUM1Q14671 1186 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-218ENST00000565688 ITPRIPL2Q3MIP1 535 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 INTS6LQ5JSJ4 861 aaKnown RBP20.11■□□□□ 0.81
CLN3-218ENST00000565688 TMEM150AQ86TG1 271 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 SYNPOQ8N3V7 929 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 MRPS31Q92665 395 aaKnown RBP20.11■□□□□ 0.81
CLN3-218ENST00000565688 TRIM9Q9C026 710 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 KIF9Q9HAQ2 790 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 KIAA1586Q9HCI6 787 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 INTS13Q9NVM9 706 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 SIX4Q9UIU6 781 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 RAB23Q9ULC3 237 aa20.11■□□□□ 0.81
CLN3-218ENST00000565688 EIF3DO15371 548 aaKnown RBP eCLIP20.1■□□□□ 0.81
CLN3-218ENST00000565688 PAPSS2O95340 614 aaPredicted RBP20.1■□□□□ 0.81
CLN3-218ENST00000565688 YEATS4O95619 227 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 TNNC2P02585 160 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 PDIA4P13667 645 aaKnown RBP20.1■□□□□ 0.81
CLN3-218ENST00000565688 SATB1Q01826 763 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 GAS6Q14393 721 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 E2F4Q16254 413 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 CNNM4Q6P4Q7 775 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 TXNDC11Q6PKC3 985 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 DPH6Q7L8W6 267 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 ADGRF2Q8IZF7 708 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 MAB21L3Q8N8X9 362 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 IQUBQ8NA54 791 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 TTC8Q8TAM2 541 aa20.1■□□□□ 0.81
CLN3-218ENST00000565688 GABRDO14764 452 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 CUTAO60888 179 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 SDHBP21912 280 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 ACAT1P24752 427 aaKnown RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 CYP2F1P24903 491 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 TNK2Q07912 1038 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 DUOXA2Q1HG44 320 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 CFAP221Q4G0U5 840 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 MON1AQ86VX9 555 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 SPATA2LQ8IUW3 424 aaPredicted RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 TRMT2BQ96GJ1 504 aaKnown RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 FUBP3Q96I24 572 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-218ENST00000565688 HPDLQ96IR7 371 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 MYRFLQ96LU7 910 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 PKMYT1Q99640 499 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 SMG9Q9H0W8 520 aaKnown RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 GKN1Q9NS71 199 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 RBM12Q9NTZ6 932 aaKnown RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 TDP1Q9NUW8 608 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 TFIP11Q9UBB9 837 aaKnown RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 GMEB2Q9UKD1 530 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 GTF3C4Q9UKN8 822 aa20.09■□□□□ 0.81
CLN3-218ENST00000565688 MAGED2Q9UNF1 606 aaPredicted RBP20.09■□□□□ 0.81
CLN3-218ENST00000565688 NOL4O94818 638 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 ASIC1P78348 528 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 CCINQ13939 588 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 ZNF268Q14587 947 aaPredicted RBP20.08■□□□□ 0.81
CLN3-218ENST00000565688 PON2Q15165 354 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 DDR2Q16832 855 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 SOWAHAQ2M3V2 549 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 DGLUCYQ7Z3D6 616 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 WDR49Q8IV35 697 aa20.08■□□□□ 0.81
CLN3-218ENST00000565688 USP13Q92995 863 aaPredicted RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms