RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 HMGA1P17096 107 aaKnown RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 CYP2J2P51589 502 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 TSPY1Q01534 308 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 FCHO2Q0JRZ9 810 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 VEPH1Q14D04 833 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 SURF1Q15526 300 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 SNRNP35Q16560 246 aaKnown RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 DUOXA2Q1HG44 320 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 INTS6LQ5JSJ4 861 aaKnown RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 GPR158Q5T848 1215 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 SDHAF4Q5VUM1 108 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 ZNF852Q6ZMS4 543 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 LIMS2Q7Z4I7 341 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 TMEM150AQ86TG1 271 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 WDR49Q8IV35 697 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 ADGRF2Q8IZF7 708 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 TMEM86AQ8N2M4 240 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 TOP6BLQ8N6T0 577 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 LEO1Q8WVC0 666 aaPredicted RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 KBTBD7Q8WVZ9 684 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 NKD2Q969F2 451 aaPredicted RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 CLDN23Q96B33 292 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 HPDLQ96IR7 371 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 ANKRD36BP1Q96IX9 119 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 BCO2Q9BYV7 579 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 KIAA1586Q9HCI6 787 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 GTF3C4Q9UKN8 822 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 PCDHB5Q9Y5E4 795 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 R4GN57 208 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 GPR179Q6PRD1 2367 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 A0A1B0GVL5 298 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 MYBPHLA2RUH7 354 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 ZNF263O14978 683 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 PRPF40AO75400 957 aaKnown RBP11.62□□□□□ -0.55
VPS39-208ENST00000564994 FGF19O95750 216 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 TNNC2P02585 160 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 F11P03951 625 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 SLFN14P0C7P3 912 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 PFKFB1P16118 471 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 CYP2F1P24903 491 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 MYL7Q01449 175 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 CYP24A1Q07973 514 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 PSMD6Q15008 389 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 NFE2Q16621 373 aaPredicted RBP11.62□□□□□ -0.55
VPS39-208ENST00000564994 DDR2Q16832 855 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 TRAPPC11Q7Z392 1133 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 CEP57L1Q8IYX8 460 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 XXYLT1Q8NBI6 393 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 KIAA0895Q8NCT3 520 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 SPATA18Q8TC71 538 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 ZNF516Q92618 1163 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 E2F7Q96AV8 911 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 CCDC127Q96BQ5 260 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 PAGE5Q96GU1 130 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 NELL2Q99435 816 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 SLC46A2Q9BY10 475 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 SMG9Q9H0W8 520 aaKnown RBP11.62□□□□□ -0.55
VPS39-208ENST00000564994 TASP1Q9H6P5 420 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 SPATA6Q9NWH7 488 aaPredicted RBP11.62□□□□□ -0.55
VPS39-208ENST00000564994 HPSEQ9Y251 543 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 NME7Q9Y5B8 376 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 PIAS3Q9Y6X2 628 aa11.62□□□□□ -0.55
VPS39-208ENST00000564994 DCHS1Q96JQ0 3298 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 MAN2B1O00754 1011 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 CHADO15335 359 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 ATP2C2O75185 946 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 DLATP10515 647 aaKnown RBP11.61□□□□□ -0.55
VPS39-208ENST00000564994 CMA1P23946 247 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 LMO2P25791 158 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 WEE1P30291 646 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 CDC25CP30307 473 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 SOX9P48436 509 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 LHX1P48742 406 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 CASP4P49662 377 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 NLRP12P59046 1061 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 SNRPFP62306 86 aaKnown RBP11.61□□□□□ -0.55
VPS39-208ENST00000564994 MYO1EQ12965 1108 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 STK4Q13043 487 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 KNOP1Q1ED39 458 aaKnown RBP11.61□□□□□ -0.55
VPS39-208ENST00000564994 ARHGAP15Q53QZ3 475 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 FAM171BQ6P995 826 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 DPH6Q7L8W6 267 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 HS2ST1Q7LGA3 356 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 C12orf56Q8IXR9 622 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 PLEKHO2Q8TD55 490 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 ZFYVE19Q96K21 471 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 CGRRF1Q99675 332 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 NDRG2Q9UN36 371 aaKnown RBP11.61□□□□□ -0.55
VPS39-208ENST00000564994 ATG2BQ96BY7 2078 aa11.61□□□□□ -0.55
VPS39-208ENST00000564994 HELZP42694 1942 aaKnown RBP11.6□□□□□ -0.55
VPS39-208ENST00000564994 DMXL1Q9Y485 3027 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 SLC38A8A6NNN8 435 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 LAMTOR5O43504 91 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 TADA3O75528 432 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 NOL4O94818 638 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 TNNI1P19237 187 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 CCNE1P24864 410 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 MAGEA9P43362 315 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 RPS9P46781 194 aaKnown RBP11.6□□□□□ -0.55
VPS39-208ENST00000564994 PSMC1P62191 440 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms