RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ABI2Q9NYB9 513 aaPredicted RBP14.34□□□□□ -0.11
CLK3-216ENST00000564468 DUSP12Q9UNI6 340 aa14.34□□□□□ -0.11
CLK3-216ENST00000564468 GREB1Q4ZG55 1949 aa14.33□□□□□ -0.11
CLK3-216ENST00000564468 AKAP3O75969 853 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 HAPLN1P10915 354 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 MYL4P12829 197 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 AVPR2P30518 371 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 GNL1P36915 607 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 RPL10AP62906 217 aaKnown RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 DLG4P78352 724 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 PRSS36Q5K4E3 855 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 SCARA3Q6AZY7 606 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 SV2AQ7L0J3 742 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 DNAJB7Q7Z6W7 309 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 OSTM1Q86WC4 334 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 SPATA2LQ8IUW3 424 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 ADSSL1Q8N142 457 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 SLC44A3Q8N4M1 653 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 CCDC150Q8NCX0 1101 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 OR6B3Q8NGW1 331 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 ING5Q8WYH8 240 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 ERCC4Q92889 916 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 MCRS1Q96EZ8 462 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 SYT15Q9BQS2 421 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 IMPG2Q9BZV3 1241 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 NXF1Q9UBU9 619 aaKnown RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 GTF3C4Q9UKN8 822 aa14.33□□□□□ -0.12
CLK3-216ENST00000564468 NUP210Q8TEM1 1887 aaPredicted RBP14.33□□□□□ -0.12
CLK3-216ENST00000564468 SLC16A3O15427 465 aaKnown RBP14.32□□□□□ -0.12
CLK3-216ENST00000564468 CSH1P0DML2 217 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 CSH2P0DML3 217 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 SRFP11831 508 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 TRIM21P19474 475 aaKnown RBP14.32□□□□□ -0.12
CLK3-216ENST00000564468 ACAT1P24752 427 aaKnown RBP14.32□□□□□ -0.12
CLK3-216ENST00000564468 CCNE1P24864 410 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 GTF2H1P32780 548 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 HTR4Q13639 388 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 SLC5A9Q2M3M2 681 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 CFAP221Q4G0U5 840 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 FAM171BQ6P995 826 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 HS6ST3Q8IZP7 471 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 TTC9BQ8N6N2 239 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 KBTBD7Q8WVZ9 684 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 GCNAQ96QF7 691 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 XYLT2Q9H1B5 865 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 DNAJC25Q9H1X3 360 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 MAGEC2Q9UBF1 373 aaPredicted RBP14.32□□□□□ -0.12
CLK3-216ENST00000564468 ZMYM5Q9UJ78 669 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 MAN1B1Q9UKM7 699 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 NUMBLQ9Y6R0 609 aa14.32□□□□□ -0.12
CLK3-216ENST00000564468 OBSL1O75147 1896 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 RIF1Q5UIP0 2472 aaKnown RBP14.31□□□□□ -0.12
CLK3-216ENST00000564468 BICDL2A1A5D9 508 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 VNN1O95497 513 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 PDGFRBP09619 1106 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 CEBPBP17676 345 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 CDC25CP30307 473 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 PIK3CAP42336 1068 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 MAGEA11P43364 429 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 MCCD1P59942 119 aaPredicted RBP14.31□□□□□ -0.12
CLK3-216ENST00000564468 ARHGAP15Q53QZ3 475 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 ANKRD40Q6AI12 368 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 ISM2Q6H9L7 571 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 FOXR2Q6PJQ5 311 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 CLEC17AQ6ZS10 378 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 TRIML1Q8N9V2 468 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 RSAD2Q8WXG1 361 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 TCEAL4Q96EI5 215 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 ASIC4Q96FT7 647 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 CEP295NLQ96MC4 621 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 PKMYT1Q99640 499 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 PI4K2AQ9BTU6 479 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 DNAI2Q9GZS0 605 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 TMEM8AQ9HCN3 771 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 TMLHEQ9NVH6 421 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 WNT16Q9UBV4 365 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 FBXL21Q9UKT6 434 aa14.31□□□□□ -0.12
CLK3-216ENST00000564468 SPTBN4Q9H254 2564 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 MYBPHLA2RUH7 354 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 A8MXQ7 604 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 ECI2O75521 394 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 SOAT2O75908 522 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 HLA-DRAP01903 254 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 ATF6P18850 670 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 LMO2P25791 158 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 CCR2P41597 374 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 GCLMP48507 274 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 MORC3Q14149 939 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 KRT39Q6A163 491 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 PARM1Q6UWI2 310 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 VSTM1Q6UX27 236 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 TMC8Q8IU68 726 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 ZC3H3Q8IXZ2 948 aaKnown RBP14.3□□□□□ -0.12
CLK3-216ENST00000564468 MYCBPAPQ8TBZ2 947 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 FGF14Q92915 247 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 E2F7Q96AV8 911 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 ELSPBP1Q96BH3 223 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 TNIP3Q96KP6 325 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 CEP63Q96MT8 703 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 GBP4Q96PP9 640 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms