RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MMP8P22894 467 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 PRKCEQ02156 737 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 KHDC1Q4VXA5 237 aaKnown RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 DSTYKQ6XUX3 929 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 TRIM72Q6ZMU5 477 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 WDR83Q9BRX9 315 aaKnown RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 TARS2Q9BW92 718 aaKnown RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 SLC38A10Q9HBR0 1119 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 FBXO6Q9NRD1 293 aaPredicted RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 LRRIQ4A6NIV6 560 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 STBD1O95210 358 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 RASSF2P50749 326 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 BBS9Q3SYG4 887 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 TFDP3Q5H9I0 405 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 ANO7Q6IWH7 933 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 VCPIP1Q96JH7 1222 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 CYLDQ9NQC7 956 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 CYP26B1Q9NR63 512 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 CORO1CQ9ULV4 474 aaPredicted RBP13.89□□□□□ -0.19
CLN3-210ENST00000563874 AGTPBP1Q9UPW5 1226 aa13.89□□□□□ -0.19
CLN3-210ENST00000563874 DGAT1O75907 488 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 LUC7L3O95232 432 aaKnown RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 LINGO3P0C6S8 592 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 PTPN4P29074 926 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CDKN2BP42772 138 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 SLC45A4Q5BKX6 768 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 FBXO36Q8NEA4 188 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 ACTL9Q8TC94 416 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 ATP6V0A1Q93050 837 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 ARL8BQ9NVJ2 186 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 ZFATQ9P243 1243 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 HEY2Q9UBP5 337 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 SLC24A2Q9UI40 661 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 LRRC42Q9Y546 428 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 C2CD2LO14523 706 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CST3P01034 146 aaPredicted RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 MARK3P27448 753 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 TUBP50607 506 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CLDN10P78369 228 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 OTUD4Q01804 1114 aaKnown RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 NCOA4Q13772 614 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CCDC142Q17RM4 750 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CTC1Q2NKJ3 1217 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 SPDYE2Q495Y8 402 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 EFHC2Q5JST6 749 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CDCA2Q69YH5 1023 aaPredicted RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 RSBN1LQ6PCB5 846 aaPredicted RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 MCPH1Q8NEM0 835 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CPT1BQ92523 772 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 MSTO1Q9BUK6 570 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 CADM1Q9BY67 442 aaKnown RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 C17orf75Q9HAS0 396 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 METTL5Q9NRN9 209 aaKnown RBP13.88□□□□□ -0.19
CLN3-210ENST00000563874 FBXO40Q9UH90 709 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 SHOC2Q9UQ13 582 aa13.88□□□□□ -0.19
CLN3-210ENST00000563874 DPPA5A6NC42 116 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 NR3C2P08235 984 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 TROVE2P10155 538 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLN3-210ENST00000563874 NEFHP12036 1026 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ERFP50548 548 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 SLC18A1P54219 525 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 LARGE2Q8N3Y3 721 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ASAP3Q8TDY4 903 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 PCDH9Q9HC56 1237 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 GINM1Q9NU53 330 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 TJP2Q9UDY2 1190 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 COL2A1P02458 1487 aaPredicted RBP13.87□□□□□ -0.19
CLN3-210ENST00000563874 ZBED4O75132 1171 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 EDN1P05305 212 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 DRICH1Q6PGQ1 229 aaPredicted RBP13.87□□□□□ -0.19
CLN3-210ENST00000563874 SCARA5Q6ZMJ2 495 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 PALM2Q8IXS6 379 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ZNF276Q8N554 614 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 MANSC1Q9H8J5 431 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 EME2A4GXA9 379 aaPredicted RBP13.87□□□□□ -0.19
CLN3-210ENST00000563874 CST8O60676 142 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ZWINTO95229 277 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 CD48P09326 243 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 SERPINB3P29508 390 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ZBTB16Q05516 673 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 MUM1Q2TAK8 710 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 GPAT2Q6NUI2 795 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 RFX8Q6ZV50 586 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ATP11CQ8NB49 1132 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 PDLIM7Q9NR12 457 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 ZNRF3Q9ULT6 936 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 CHMP2BQ9UQN3 213 aa13.87□□□□□ -0.19
CLN3-210ENST00000563874 DRG1Q9Y295 367 aaKnown RBP13.87□□□□□ -0.19
CLN3-210ENST00000563874 NFASCO94856 1347 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 K7ERI5 159 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 RGS20O76081 388 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 TMEM63AO94886 807 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 ITGAVP06756 1048 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 WEE2P0C1S8 567 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 MCL1Q07820 350 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 CCDC6Q16204 474 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 C4orf50Q6ZRC1 276 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 TTC7BQ86TV6 843 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 ARMC2Q8NEN0 867 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 DTX3LQ8TDB6 740 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms