RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZSCAN22P10073 491 aaPredicted RBP18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 DDX6P26196 483 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 LHX1P48742 406 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 NLRP12P59046 1061 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 PLCB2Q00722 1185 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 MYL7Q01449 175 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 CFAP221Q4G0U5 840 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 RALGPS2Q86X27 583 aaPredicted RBP18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 BPIFB1Q8TDL5 484 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 GIPC2Q8TF65 315 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 RUBCNQ92622 972 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 DHX58Q96C10 678 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 MYRFLQ96LU7 910 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 MTMR12Q9C0I1 747 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 LMAN1LQ9HAT1 526 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 UBE4BO95155 1302 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 TGFB1I1O43294 461 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 PRAMEF12O95522 483 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CSH1P0DML2 217 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CSH2P0DML3 217 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CCNE1P24864 410 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 ASIC1P78348 528 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CYP4F8P98187 520 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 FOXK2Q01167 660 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 BFSP1Q12934 665 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 TAF12Q16514 161 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 SOWAHAQ2M3V2 549 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 FAM26FQ5R3K3 315 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 OSTM1Q86WC4 334 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CBWD2Q8IUF1 395 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 WDR49Q8IV35 697 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CMTM8Q8IZV2 173 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 CELF5Q8N6W0 485 aaKnown RBP18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 OR5B17Q8NGF7 314 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 ATRIPQ8WXE1 791 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 HPS3Q969F9 1004 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 TRMT2BQ96GJ1 504 aaKnown RBP18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 FUBP3Q96I24 572 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 ANKRD36BP1Q96IX9 119 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 EPC1Q9H2F5 836 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 HSPBP1Q9NZL4 362 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 SNX9Q9Y5X1 595 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 PTPRJQ12913 1337 aa18.49■□□□□ 0.55
VPS9D1-203ENST00000563798 PRPF40AO75400 957 aaKnown RBP18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 NOL4O94818 638 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 F13A1P00488 732 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 KRT19P08727 400 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 PCSK1P29120 753 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 CTHP32929 405 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 CCR3P51677 355 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 RPL10AP62906 217 aaKnown RBP18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 MYO1EQ12965 1108 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 DUOXA2Q1HG44 320 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 FAM171BQ6P995 826 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 UNC13DQ70J99 1090 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 ADGRF2Q8IZF7 708 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 FAM84AQ96KN4 292 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 PI4K2AQ9BTU6 479 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 AGPAT3Q9NRZ7 376 aa18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 THG1LQ9NWX6 298 aaKnown RBP18.48■□□□□ 0.55
VPS9D1-203ENST00000563798 PVALEFA0A1B0GWK0 134 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 SLC38A8A6NNN8 435 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 SPECC1L-ADORA2AF8WAN1 911 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 PAPSS2O95340 614 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 TNNC2P02585 160 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 FAM163BP0C2L3 166 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 MAGEA11P43364 429 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 CDR1P51861 262 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 KPNA1P52294 538 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 NRLP54845 237 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 LRRC32Q14392 662 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 ZNF268Q14587 947 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 PPP2R5DQ14738 602 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 BMT2Q1RMZ1 405 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 DGKKQ5KSL6 1271 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 TSSK4Q6SA08 328 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 MON1AQ86VX9 555 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 GPIHBP1Q8IV16 184 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 C12orf56Q8IXR9 622 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 SPEM1Q8N4L4 309 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 SCFD1Q8WVM8 642 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 HPDLQ96IR7 371 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 CEP295NLQ96MC4 621 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 FAM83CQ9BQN1 747 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 KIF9Q9HAQ2 790 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 CGNQ9P2M7 1197 aaKnown RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 UXTQ9UBK9 157 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 GTF3C4Q9UKN8 822 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 PCDHA7Q9UN72 937 aa18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 KIF26AQ9ULI4 1882 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-203ENST00000563798 FRYLO94915 3013 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 POLR2DO15514 142 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 ACAT1P24752 427 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 CYP2F1P24903 491 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 SOX9P48436 509 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 GPR15P49685 360 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 GAS6Q14393 721 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 SNRNP35Q16560 246 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 WDR44Q5JSH3 913 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 RESP18Q5W5W9 173 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms