RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CYLC2Q14093 348 aaPredicted RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 PPP2R5EQ16537 467 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 PLEKHG4Q58EX7 1191 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 TMEM63BQ5T3F8 832 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 LRRC8BQ6P9F7 803 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 TRMT10CQ7L0Y3 403 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 RBM46Q8TBY0 533 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 OTUD5Q96G74 571 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 POP1Q99575 1024 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 RRAGCQ9HB90 399 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 R3HDM2Q9Y2K5 976 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 MYH9P35579 1960 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 SMIM31A0A1B0GVY4 71 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 ARHGEF35A5YM69 484 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 DCAF8L1A6NGE4 600 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 MAGEB2O15479 319 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 EDF1O60869 148 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 ZBED4O75132 1171 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 ANPEPP15144 967 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 MUTP22033 750 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 GTF2H1P32780 548 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 MTTPP55157 894 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 KYNUQ16719 465 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 PCNX4Q63HM2 1172 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 KLHL35Q6PF15 583 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 CCDC137Q6PK04 289 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 RBM44Q6ZP01 1051 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 FRMD5Q7Z6J6 570 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 PHLDB2Q86SQ0 1253 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 U2AF1L4Q8WU68 220 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 PPP2R3CQ969Q6 453 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 DGCR14Q96DF8 476 aaKnown RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 ATG4CQ96DT6 458 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 PRR11Q96HE9 360 aaPredicted RBP13.98□□□□□ -0.17
CLK3-206ENST00000562078 AGAP3Q96P47 875 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 TAAR1Q96RJ0 339 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 SMC6Q96SB8 1091 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 USP29Q9HBJ7 922 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 NPHS2Q9NP85 383 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 ANGPTL2Q9UKU9 493 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 NAALADL1Q9UQQ1 740 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 LCTP09848 1927 aa13.98□□□□□ -0.17
CLK3-206ENST00000562078 EIF3DO15371 548 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLK3-206ENST00000562078 TGFB1I1O43294 461 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 BAG2O95816 211 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 XRCC5P13010 732 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 CRABP2P29373 138 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 GHRHRQ02643 423 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 MTMR1Q13613 665 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 SLC45A4Q5BKX6 768 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 NSMFQ6X4W1 530 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 B3GNT6Q6ZMB0 384 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 TREML1Q86YW5 311 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 FAM178BQ8IXR5 827 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 SLC35G2Q8TBE7 412 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 IRGQQ8WZA9 623 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 PTCD3Q96EY7 689 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 TTC1Q99614 292 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 AGO4Q9HCK5 861 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 SAR1AQ9NR31 198 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 HEY1Q9Y5J3 304 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 UBIAD1Q9Y5Z9 338 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 ADGRA3Q8IWK6 1321 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 IGSF9BQ9UPX0 1349 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 CCDC160A6NGH7 325 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 FAM47DPA6NHR8 397 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 DHX15O43143 795 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 MYCLP12524 364 aaPredicted RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 SLC9A1P19634 815 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 KCNJ1P48048 391 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 GALCP54803 685 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 LRRC36Q1X8D7 754 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 ODR4Q5SWX8 454 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 ZNF362Q5T0B9 420 aaPredicted RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 ACAD11Q709F0 780 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 NIPA1Q7RTP0 329 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 TRIM50Q86XT4 487 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 ATP11CQ8NB49 1132 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 DIS3LQ8TF46 1054 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 CTNNBL1Q8WYA6 563 aaPredicted RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 DCTN4Q9UJW0 460 aa13.97□□□□□ -0.17
CLK3-206ENST00000562078 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.97□□□□□ -0.17
CLK3-206ENST00000562078 A0A0A6YYK5 440 aaPredicted RBP13.96□□□□□ -0.17
CLK3-206ENST00000562078 HTR3EA5X5Y0 456 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 VWA5AO00534 786 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 PODXLO00592 558 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 IDO1P14902 403 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 ABCB4P21439 1286 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 CHRNA3P32297 505 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 DCTN2Q13561 401 aaKnown RBP13.96□□□□□ -0.17
CLK3-206ENST00000562078 COG2Q14746 738 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 PGM5Q15124 567 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 GRAMD4Q6IC98 578 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 ISLR2Q6UXK2 745 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 RAPH1Q70E73 1250 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 OTOAQ7RTW8 1153 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 ERO1BQ86YB8 467 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 FIZ1Q96SL8 496 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 RMDN3Q96TC7 470 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms